Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027852.1

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2687

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027852.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1162 bp

gaggcccataaaggccgaattgcaatgctcatcgcactcgatcggtcgacaaatgagacacccccgattacttcatcgcagcagcgtgcgggaattttgtgggggtctgaattggggtttggcgggaagaggtgtaattgtaaaggacaaagctttccaaaatttgaactcctcgcaactctatctccatggcgcaacagttgcagaatcactgtctggacttgcggtttatgttagaggaaatgtcaccggagaagctcgtaaaatttccaagccgcagtttggcaaacttttaaaacaggttaccaatcacatatcatccatgtcaaacatatatgtccatgatggggcagttggttcatcactcaaagctggtgcgaaagttcgcgttataagtgatagcccatctgctgtattgtcactttccagcattctctgggggacacccacccgtgcagtctctcatgattctcgtcctttaacaatttatgtggctacttctataagtccagacattggagacattattggccttgaattgaaaggagataatgcacttatagctgctgatattgagcgttcttcacttgttttatgtggcaatgccttctcagattcaaatgcaactaaacaagcactagctgccttgtccggacctgttatatttgcccgaagaggccttcccctatctgcaaggcttttagtgtttggtgattctgtgcttcttttatttgcaccagaagataccattaaggggtgtggagatctgttggtgccaggagatataggtgttattctttcttctgaaggtgttgccccattgtttcaaactggaagctctggtagctcaaatctattcaagcccgctgctgtagtccttgcaacttttaacagcagttctggtgttataccttctgtatcaaagcttgcacctggccaagcagcttatcacttcctggctggttatcaaaatgggaagttcatgcctgcatacagcaaaggcccttcatctattgacctgttggaactagcaaaggagtttctgttgaagttgaaagatgaccggatctcatcctacctggttaatgccaatggaggagaaaagggtgcaactggtaagagcaaatcagatgacttggactttctcttggatagggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

386

Amino Acids

40.68

Weight (kDa)

9.24

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	773
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	388
AccIII	TCCGGA	1 cut(s)	651
AciI	CCGC	5 cut(s)	89, 123, 225, 276, 865
AclWI	GGATC	1 cut(s)	1074
AcoI	YGGCCR	1 cut(s)	935
AcsI	RAATTY	3 cut(s)	93, 161, 265
AcuI	CTGAAG	1 cut(s)	826
AfiI	CCNNNNNNNGG	4 cut(s)	282, 347, 516, 754
AgsI	TTSAA	8 cut(s)	167, 537, 542, 619, 828, 860, 1049, 1055
AjnI	CCWGG	4 cut(s)	776, 932, 955, 1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	9 cut(s)	153, 258, 372, 564, 642, 838, 847, 926, 945
AluI	AGCT	9 cut(s)	153, 258, 372, 564, 642, 838, 847, 926, 945
Alw26I	GTCTC	3 cut(s)	50, 464, 514
AlwI	GGATC	1 cut(s)	1074
Aor13HI	TCCGGA	1 cut(s)	651
AoxI	GGCC	6 cut(s)	3, 13, 530, 677, 935, 1001
ApeKI	GCWGC	6 cut(s)	79, 82, 564, 642, 867, 942
ApoI	RAATTY	3 cut(s)	93, 161, 265
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	4, 654, 1002
AsuHPI	GGTGA	2 cut(s)	239, 723
AvaII	GGWCC	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	773
BbvI	GCAGC	6 cut(s)	91, 94, 551, 629, 854, 954
BccI	CCATC	2 cut(s)	339, 413
BciT130I	CCWGG	4 cut(s)	778, 934, 957, 1080
BcoDI	GTCTC	3 cut(s)	50, 464, 514
BfaI	CTAG	2 cut(s)	639, 1029
BfmI	CTRYAG	1 cut(s)	871
BglII	AGATCT	1 cut(s)	764
BisI	GCNGC	7 cut(s)	80, 83, 276, 565, 643, 868, 943
BlsI	GCNGC	7 cut(s)	81, 84, 277, 566, 644, 869, 944
Bme1390I	CCNGG	4 cut(s)	778, 934, 957, 1080
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	3 cut(s)	4, 654, 1002
BmiI	GGNNCC	1 cut(s)	775
BmrFI	CCNGG	4 cut(s)	778, 934, 957, 1080
BsaJI	CCNNGG	1 cut(s)	188
BsaWI	WCCGGW	3 cut(s)	249, 651, 1063
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 1029, 1059
Bsc4I	CCNNNNNNNGG	4 cut(s)	282, 347, 516, 754
Bse1I	ACTGG	2 cut(s)	836, 1118
Bse3DI	GCAATG	2 cut(s)	30, 608
BseAI	TCCGGA	1 cut(s)	651
BseBI	CCWGG	4 cut(s)	778, 934, 957, 1080
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	2 cut(s)	318, 1071
BseLI	CCNNNNNNNGG	4 cut(s)	282, 347, 516, 754
BseMI	GCAATG	2 cut(s)	30, 608
BseMII	CTCAG	1 cut(s)	625
BseNI	ACTGG	2 cut(s)	836, 1118
BseRI	GAGGAG	2 cut(s)	161, 1111
BseXI	GCAGC	6 cut(s)	91, 94, 551, 629, 854, 954
BsgI	GTGCAG	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	388
Bsh1285I	CGRYCG	2 cut(s)	43, 47
BshFI	GGCC	6 cut(s)	5, 15, 532, 679, 937, 1003
BshNI	GGYRCC	1 cut(s)	773
BsiEI	CGRYCG	2 cut(s)	43, 47
BsiSI	CCGG	3 cut(s)	250, 652, 1064
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	4 cut(s)	282, 347, 516, 754
BsmAI	GTCTC	3 cut(s)	50, 464, 514
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	6 cut(s)	5, 15, 532, 679, 937, 1003
Bsp13I	TCCGGA	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	40, 764, 1066
Bsp19I	CCATGG	1 cut(s)	188
BspACI	CCGC	5 cut(s)	89, 123, 225, 276, 865
BspANI	GGCC	6 cut(s)	5, 15, 532, 679, 937, 1003
BspCNI	CTCAG	1 cut(s)	624
BspEI	TCCGGA	1 cut(s)	651
BspFNI	CGCG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	775
BspPI	GGATC	1 cut(s)	1074
BspT107I	GGYRCC	1 cut(s)	773
BsrDI	GCAATG	2 cut(s)	30, 608
BsrI	ACTGG	2 cut(s)	836, 1118
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	40, 764, 1066
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	4 cut(s)	778, 934, 957, 1080
Bst4CI	ACNGT	2 cut(s)	200, 214
Bst6I	CTCTTC	2 cut(s)	122, 668
BstAPI	GCANNNNNTGC	2 cut(s)	201, 642
BstC8I	GCNNGC	4 cut(s)	87, 865, 928, 988
BstDEI	CTNAG	1 cut(s)	611
BstDSI	CCRYGG	1 cut(s)	188
BstEII	GGTNACC	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	318, 1071
BstFNI	CGCG	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	43, 767, 1069
BstMAI	GTCTC	3 cut(s)	50, 464, 514
BstMBI	GATC	3 cut(s)	40, 764, 1066
BstMCI	CGRYCG	2 cut(s)	43, 47
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 561, 642, 844
BstNI	CCWGG	4 cut(s)	778, 934, 957, 1080
BstPI	GGTNACC	1 cut(s)	302
BstSCI	CCNGG	4 cut(s)	776, 932, 955, 1078
BstSFI	CTRYAG	1 cut(s)	871
BstUI	CGCG	1 cut(s)	388
BstV1I	GCAGC	6 cut(s)	91, 94, 551, 629, 854, 954
BstX2I	RGATCY	2 cut(s)	764, 1066
BstYI	RGATCY	2 cut(s)	764, 1066
BsuRI	GGCC	6 cut(s)	5, 15, 532, 679, 937, 1003
BtgI	CCRYGG	1 cut(s)	188
BtgZI	GCGATG	2 cut(s)	16, 60
BtsCI	GGATG	2 cut(s)	318, 1071
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	4 cut(s)	87, 865, 928, 988
CciI	TCATGA	1 cut(s)	464
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	4, 654, 1002
CsiI	ACCWGGT	1 cut(s)	1078
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	5 cut(s)	189, 323, 342, 465, 983
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	3 cut(s)	42, 766, 1068
DpnII	GATC	3 cut(s)	40, 764, 1066
DraI	TTTAAA	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	935
Eam1104I	CTCTTC	2 cut(s)	122, 668
EarI	CTCTTC	2 cut(s)	122, 668
Eco130I	CCWWGG	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	826
Eco91I	GGTNACC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoO65I	GGTNACC	1 cut(s)	302
EcoRII	CCWGG	4 cut(s)	776, 932, 955, 1078
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	192, 326, 345, 468, 986
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	5 cut(s)	188, 322, 341, 464, 982
FauI	CCCGC	3 cut(s)	82, 116, 872
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	7 cut(s)	80, 83, 276, 565, 643, 868, 943
FokI	GGATG	2 cut(s)	305, 1058
Fsp4HI	GCNGC	7 cut(s)	80, 83, 276, 565, 643, 868, 943
FspBI	CTAG	2 cut(s)	639, 1029
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	7 cut(s)	80, 83, 276, 565, 643, 868, 943
HaeIII	GGCC	6 cut(s)	5, 15, 532, 679, 937, 1003
HapII	CCGG	3 cut(s)	250, 652, 1064
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	192, 326, 345, 468, 986
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	2 cut(s)	151, 924
HinfI	GANTC	4 cut(s)	207, 468, 615, 714
HpaII	CCGG	3 cut(s)	250, 652, 1064
HphI	GGTGA	2 cut(s)	239, 723
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	109, 614, 806, 1130
Hpy188III	TCNNGA	4 cut(s)	217, 465, 510, 652
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	5 cut(s)	617, 690, 801, 922, 1015
HpyCH4III	ACNGT	2 cut(s)	200, 214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 561, 642, 844
HpyF3I	CTNAG	1 cut(s)	611
Hsp92II	CATG	5 cut(s)	192, 326, 345, 468, 986
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	651
Kzo9I	GATC	3 cut(s)	40, 764, 1066
Lsp1109I	GCAGC	6 cut(s)	91, 94, 551, 629, 854, 954
MabI	ACCWGGT	1 cut(s)	1078
MaeI	CTAG	2 cut(s)	639, 1029
MaeIII	GTNAC	3 cut(s)	245, 302, 418
MalI	GATC	3 cut(s)	42, 766, 1068
MboI	GATC	3 cut(s)	40, 764, 1066
MboII	GAAGA	5 cut(s)	139, 574, 685, 753, 793
MflI	RGATCY	2 cut(s)	764, 1066
MlsI	TGGCCA	1 cut(s)	937
MluCI	AATT	8 cut(s)	18, 93, 110, 136, 161, 265, 484, 537
MluNI	TGGCCA	1 cut(s)	937
MmeI	TCCRAC	1 cut(s)	1003
MnlI	CCTC	5 cut(s)	123, 182, 231, 669, 1089
Mox20I	TGGCCA	1 cut(s)	937
MroI	TCCGGA	1 cut(s)	651
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	5 cut(s)	294, 480, 751, 889, 1084
Msp20I	TGGCCA	1 cut(s)	937
MspA1I	CMGCKG	1 cut(s)	867
MspI	CCGG	3 cut(s)	250, 652, 1064
MspR9I	CCNGG	4 cut(s)	778, 934, 957, 1080
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	4 cut(s)	778, 934, 957, 1080
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	4 cut(s)	201, 561, 642, 844
NcoI	CCATGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	40, 764, 1066
NlaIII	CATG	5 cut(s)	192, 326, 345, 468, 986
NlaIV	GGNNCC	1 cut(s)	775
NmuCI	GTSAC	2 cut(s)	245, 418
PagI	TCATGA	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	679
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	207, 468, 615, 714
PflMI	CCANNNNNTGG	1 cut(s)	516
PkrI	GCNGC	7 cut(s)	81, 84, 277, 566, 644, 869, 944
Ple19I	CGATCG	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	4 cut(s)	776, 932, 955, 1078
PspEI	GGTNACC	1 cut(s)	302
PspGI	CCWGG	4 cut(s)	776, 932, 955, 1078
PspN4I	GGNNCC	1 cut(s)	775
PspPI	GGNCC	3 cut(s)	4, 654, 1002
PsuI	RGATCY	2 cut(s)	764, 1066
PvuI	CGATCG	1 cut(s)	43
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	5 cut(s)	294, 480, 751, 889, 1084
SatI	GCNGC	7 cut(s)	80, 83, 276, 565, 643, 868, 943
Sau3AI	GATC	3 cut(s)	40, 764, 1066
Sau96I	GGNCC	3 cut(s)	4, 654, 1002
ScrFI	CCNGG	4 cut(s)	778, 934, 957, 1080
SexAI	ACCWGGT	1 cut(s)	1078
SfcI	CTRYAG	1 cut(s)	871
SinI	GGWCC	1 cut(s)	654
Sse9I	AATT	8 cut(s)	18, 93, 110, 136, 161, 265, 484, 537
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	5 cut(s)	89, 123, 225, 276, 865
SspMI	CTAG	2 cut(s)	639, 1029
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	4 cut(s)	776, 932, 955, 1078
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	200, 214
TaqI	TCGA	2 cut(s)	39, 47
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	8 cut(s)	18, 93, 110, 136, 161, 265, 484, 537
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	4 cut(s)	207, 468, 615, 714
Tru1I	TTAA	5 cut(s)	294, 480, 751, 889, 1084
Tru9I	TTAA	5 cut(s)	294, 480, 751, 889, 1084
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	2 cut(s)	245, 418
TseI	GCWGC	6 cut(s)	79, 82, 564, 642, 867, 942
Tsp45I	GTSAC	2 cut(s)	245, 418
TspDTI	ATGAA	4 cut(s)	63, 349, 971, 997
TspRI	CASTG	1 cut(s)	217
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	654
XapI	RAATTY	3 cut(s)	93, 161, 265
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	2 cut(s)	639, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.