Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Reverse (-)

69558657 .. 69570378

Gene Structure 11722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG481000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAATTGTGGTTTTCTCTTTACTCAGTTCTACGAAAGCGAACTTCTCCTGATGCTGCTGAATACAAATTGTCTACTATCCAAATTCCAAATATTGGTGACATTATTGGCCTTGAATTAAAAGGATATAATGCACTTATTGCTGCTGATATTGAGCGTTCTTCACTTGTTTTATGTGGCAATGCATTCTCAGATTCAAATGCAACTAAAGTAGCACTAGCTATCTTGTCCGGATCTGTTATATTTTCTCGAAGAGGCCTTCCCCTATCTGTAAGGCTTTTAGTGTTTGGTGATTATATGCTTATTTTATGTGCACCAGAAGATACCATTAAGGGTTGTGGAGATTTGTTAGTGCCAGGAGATGTAGGAGTTATTCGTTCTTCTGAAGGTGTTGCCCCATTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

135

Amino Acids

14.46

Weight (kDa)

6.2

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	230
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	116, 198
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	316
Alw44I	GTGCAC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	241
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	2 cut(s)	109, 256
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	56, 143
ApoI	RAATTY	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	110, 302
BaeGI	GKGCMC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	43, 130
BciT130I	CCWGG	1 cut(s)	357
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	2 cut(s)	57, 144
BlsI	GCNGC	2 cut(s)	58, 145
Bme1390I	CCNGG	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	39, 204
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	43, 130
BshFI	GGCC	2 cut(s)	111, 258
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	111, 258
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	233
BspANI	GGCC	2 cut(s)	111, 258
BspCNI	CTCAG	2 cut(s)	38, 203
BspEI	TCCGGA	1 cut(s)	230
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	187
BssMI	GATC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	25, 190
BstKTI	GATC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	43, 130
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	111, 258
CviJI	RGCY	4 cut(s)	111, 221, 258, 277
CviKI_1	RGCY	4 cut(s)	111, 221, 258, 277
DdeI	CTNAG	2 cut(s)	25, 190
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	187
FaiI	YATR	6 cut(s)	129, 175, 242, 297, 299, 310
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	2 cut(s)	57, 144
Fsp4HI	GCNGC	2 cut(s)	57, 144
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	57, 144
HaeIII	GGCC	2 cut(s)	111, 258
HapII	CCGG	1 cut(s)	231
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	110, 302
Hpy166II	GTNNAC	2 cut(s)	75, 314
Hpy188I	TCNGA	2 cut(s)	193, 385
Hpy188III	TCNNGA	3 cut(s)	50, 231, 249
Hpy8I	GTNNAC	2 cut(s)	75, 314
HpyAV	CCTTC	2 cut(s)	269, 380
HpyCH4V	TGCA	4 cut(s)	134, 185, 203, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	25, 190
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	5 cut(s)	63, 244, 330, 342, 369
Lsp1109I	GCAGC	2 cut(s)	43, 130
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	4 cut(s)	153, 264, 332, 372
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	5, 68, 84, 116
MnlI	CCTC	1 cut(s)	248
Mph1103I	ATGCAT	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	230
MseI	TTAA	3 cut(s)	119, 330, 406
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	258
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	2 cut(s)	58, 145
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	119, 330, 406
SatI	GCNGC	2 cut(s)	57, 144
Sau3AI	GATC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	2 cut(s)	223, 391
SfaNI	GCATC	1 cut(s)	43
Sse9I	AATT	4 cut(s)	5, 68, 84, 116
SseBI	AGGCCT	1 cut(s)	258
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	1 cut(s)	250
TasI	AATT	4 cut(s)	5, 68, 84, 116
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	119, 330, 406
Tru9I	TTAA	3 cut(s)	119, 330, 406
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	56, 143
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	312
XapI	RAATTY	1 cut(s)	84
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	1 cut(s)	218
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.