Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Reverse (-)

67429154 .. 67432350

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGACTCCTCCGATTACTTCATCGCAGCAGCGTGCGGGAATTTTGTGGGGGTCTGAATTGGGGTTTGGCGGGAAGAGGTGTAATTGTAAAGGACAAAGCTTTCCAAAATTTGAACTCCTCGCAACTCTATCTCCACGGCGCAACAGTTGCAGAATCACTGTCTGGACTTGCGGTTTATGTTAGAGGAAATGTCACCGGAGAAGCTCGTAAAATTTCCAAGCCGCAGTTCGGCAAACTTTTAATACAGGCACGTTTGCTCTTTCTCTTCTTCTCTCTCTGCTTAGTTACCAATCACATATCATCCATGTCAAACATATATGTCCATGATGGGGCAGTTGGTTCATCACTCAAAGCTGGTGCAAAAGTTCGCATTATAAGTGATAGCCCATCTGCTGTATTGTCACTTTCCAGCATTCTTTGGGGGACACCCACCCGTGCAGTCTCTCATGATTCTCGTCCTTTAACAGTTTATGTGGCTACTTCTATGAGTCCAGACATTGGAGACATTATTGGCCTTGAATTGAAAGGAGATAATGCACTTATAGCTGCTGATATTGAGCGTTCTTCACTTGTTTTATGTGGCAATGCCTTCTCAGATTCAAATGCAACTAAACAAGCACTAGCTGCCTTGTCCGGACCTGTTATATTTGCCCGAAGAGGCCTTCCCCTATCTGCAAGTTCTGGTGTTATACCTTCTGTATCAAAGCTTGCACCTGGCCAGGCAGCTTATCACTTCCTGGCTGGTTATCAAAATGGGAAGTTCATGCCTCATACAGCAAAGTTGAAAGATGACCGGATCTCATCCTACCTGGTTAATGCCAATGGAGGAGAAAAGGGTGCAACTGGCAAAGATTTTACTCGGTTGGTGGAATCAACTCTGTCAAATAACATCCCACCGTTCCAAGCAAAAGGTGGGAATCTTCAAGACACATACAAGAGCTTCTTATCCAGCAGATTTGGAGAAGTGCCAGAAGAATTCTCATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

329

Amino Acids

35.08

Weight (kDa)

9.63

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccIII	TCCGGA	1 cut(s)	635
AciI	CCGC	4 cut(s)	37, 71, 173, 224
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	4 cut(s)	41, 109, 213, 977
AfiI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
AgsI	TTSAA	6 cut(s)	115, 521, 526, 603, 787, 926
AjnI	CCWGG	4 cut(s)	715, 720, 738, 810
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 212, 244
AluBI	AGCT	8 cut(s)	101, 206, 356, 548, 626, 709, 728, 942
AluI	AGCT	8 cut(s)	101, 206, 356, 548, 626, 709, 728, 942
Alw26I	GTCTC	2 cut(s)	448, 498
AlwI	GGATC	1 cut(s)	806
Aor13HI	TCCGGA	1 cut(s)	635
AoxI	GGCC	3 cut(s)	514, 661, 718
ApeKI	GCWGC	5 cut(s)	27, 30, 548, 626, 725
ApoI	RAATTY	4 cut(s)	41, 109, 213, 977
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	720
BbvI	GCAGC	5 cut(s)	39, 42, 535, 613, 737
BccI	CCATC	2 cut(s)	323, 397
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	4 cut(s)	717, 722, 740, 812
BcoDI	GTCTC	2 cut(s)	448, 498
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 726
BlsI	GCNGC	6 cut(s)	29, 32, 225, 550, 628, 727
Bme1390I	CCNGG	4 cut(s)	717, 722, 740, 812
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmrFI	CCNGG	4 cut(s)	717, 722, 740, 812
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	3 cut(s)	197, 635, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 331, 500
Bse1I	ACTGG	1 cut(s)	850
Bse3DI	GCAATG	1 cut(s)	592
BseAI	TCCGGA	1 cut(s)	635
BseBI	CCWGG	4 cut(s)	717, 722, 740, 812
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	302, 803, 891
BseLI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	2 cut(s)	109, 843
BseXI	GCAGC	5 cut(s)	39, 42, 535, 613, 737
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	516, 663, 720
BsiSI	CCGG	3 cut(s)	198, 636, 796
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	230, 331, 500
BsmAI	GTCTC	2 cut(s)	448, 498
BsmFI	GGGAC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	3 cut(s)	516, 663, 720
Bsp13I	TCCGGA	1 cut(s)	635
Bsp143I	GATC	1 cut(s)	798
BspACI	CCGC	4 cut(s)	37, 71, 173, 224
BspANI	GGCC	3 cut(s)	516, 663, 720
BspCNI	CTCAG	1 cut(s)	608
BspEI	TCCGGA	1 cut(s)	635
BspHI	TCATGA	1 cut(s)	448
BspPI	GGATC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	850
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	798
Bst2UI	CCWGG	4 cut(s)	717, 722, 740, 812
Bst4CI	ACNGT	4 cut(s)	148, 162, 469, 900
Bst6I	CTCTTC	3 cut(s)	70, 272, 652
BstAPI	GCANNNNNTGC	2 cut(s)	149, 626
BstC8I	GCNNGC	2 cut(s)	35, 711
BstDEI	CTNAG	2 cut(s)	283, 595
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	3 cut(s)	302, 803, 891
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	801
BstMAI	GTCTC	2 cut(s)	448, 498
BstMBI	GATC	1 cut(s)	798
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 545, 626
BstNI	CCWGG	4 cut(s)	717, 722, 740, 812
BstSCI	CCNGG	4 cut(s)	715, 720, 738, 810
BstV1I	GCAGC	5 cut(s)	39, 42, 535, 613, 737
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	516, 663, 720
BtgI	CCRYGG	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	8
BtsCI	GGATG	3 cut(s)	302, 803, 891
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	35, 711
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	810
CviAII	CATG	4 cut(s)	307, 326, 449, 766
DdeI	CTNAG	2 cut(s)	283, 595
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	718
Eam1104I	CTCTTC	3 cut(s)	70, 272, 652
EarI	CTCTTC	3 cut(s)	70, 272, 652
Eco147I	AGGCCT	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	977
EcoRII	CCWGG	4 cut(s)	715, 720, 738, 810
FaeI	CATG	4 cut(s)	310, 329, 452, 769
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	4 cut(s)	306, 325, 448, 765
FauI	CCCGC	2 cut(s)	30, 64
Fnu4HI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 726
FokI	GGATG	3 cut(s)	289, 790, 878
Fsp4HI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 726
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 726
HaeIII	GGCC	3 cut(s)	516, 663, 720
HapII	CCGG	3 cut(s)	198, 636, 796
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	4 cut(s)	310, 329, 452, 769
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	99, 707
HinfI	GANTC	7 cut(s)	6, 155, 452, 490, 599, 872, 919
HpaII	CCGG	3 cut(s)	198, 636, 796
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	14, 57, 598, 989
Hpy188III	TCNNGA	5 cut(s)	165, 449, 494, 636, 926
HpyAV	CCTTC	3 cut(s)	601, 674, 705
HpyCH4III	ACNGT	4 cut(s)	148, 162, 469, 900
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	8 cut(s)	152, 362, 440, 539, 608, 677, 713, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 545, 626
HpyF3I	CTNAG	2 cut(s)	283, 595
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	4 cut(s)	310, 329, 452, 769
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	635
Kzo9I	GATC	1 cut(s)	798
Lsp1109I	GCAGC	5 cut(s)	39, 42, 535, 613, 737
MabI	ACCWGGT	1 cut(s)	810
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	3 cut(s)	193, 286, 402
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	7 cut(s)	87, 259, 262, 558, 669, 914, 986
MflI	RGATCY	1 cut(s)	798
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	7 cut(s)	41, 58, 84, 109, 213, 521, 977
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	7 cut(s)	20, 71, 130, 179, 653, 780, 821
Mox20I	TGGCCA	1 cut(s)	720
MroI	TCCGGA	1 cut(s)	635
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	3 cut(s)	242, 464, 816
Msp20I	TGGCCA	1 cut(s)	720
MspI	CCGG	3 cut(s)	198, 636, 796
MspR9I	CCNGG	4 cut(s)	717, 722, 740, 812
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	4 cut(s)	717, 722, 740, 812
MwoI	GCNNNNNNNGC	3 cut(s)	149, 545, 626
NdeII	GATC	1 cut(s)	798
NlaIII	CATG	4 cut(s)	310, 329, 452, 769
NmuCI	GTSAC	2 cut(s)	193, 402
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	5 cut(s)	155, 452, 599, 872, 919
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	6 cut(s)	29, 32, 225, 550, 628, 727
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	377
Psp6I	CCWGG	4 cut(s)	715, 720, 738, 810
PspGI	CCWGG	4 cut(s)	715, 720, 738, 810
PspPI	GGNCC	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	242, 464, 816
SatI	GCNGC	6 cut(s)	28, 31, 224, 549, 627, 726
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	4 cut(s)	717, 722, 740, 812
SexAI	ACCWGGT	1 cut(s)	810
SinI	GGWCC	1 cut(s)	638
Sse9I	AATT	7 cut(s)	41, 58, 84, 109, 213, 521, 977
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	4 cut(s)	37, 71, 173, 224
SspMI	CTAG	1 cut(s)	623
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	4 cut(s)	715, 720, 738, 810
TaaI	ACNGT	4 cut(s)	148, 162, 469, 900
TaiI	ACGT	1 cut(s)	256
TasI	AATT	7 cut(s)	41, 58, 84, 109, 213, 521, 977
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	5 cut(s)	155, 452, 599, 872, 919
Tru1I	TTAA	3 cut(s)	242, 464, 816
Tru9I	TTAA	3 cut(s)	242, 464, 816
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	193, 402
TseI	GCWGC	5 cut(s)	27, 30, 548, 626, 725
Tsp45I	GTSAC	2 cut(s)	193, 402
TspDTI	ATGAA	3 cut(s)	11, 333, 754
TspRI	CASTG	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	4 cut(s)	41, 109, 213, 977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.