Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Forward (+)

59813209 .. 59831044

Gene Structure 17836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG441300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGCCTGCCCTATTTATGGGTTGTGGAGATTTGTTGGTGCCAGGAGAAGTAGGAGTTATTCGTTCTTCTGAAGGTGTTGCCCCAATGTTTCAAACTGGAAGCTCTGGTAGCTCAAATCTATTCAAGTTGCTAGCTGCTGCAGTCCTTGCAACTTTTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PEPCK_ATP

Protein Analysis

54

Amino Acids

5.52

Weight (kDa)

4.78

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	92, 124
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	3 cut(s)	102, 111, 134
AluI	AGCT	3 cut(s)	102, 111, 134
ApeKI	GCWGC	2 cut(s)	134, 137
AsuNHI	GCTAGC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	121, 124
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	131
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	135, 138
BlsI	GCNGC	2 cut(s)	136, 139
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	42
BmtI	GCTAGC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseNI	ACTGG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	121, 124
BshNI	GGYRCC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	39
BspMAI	CTGCAG	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	6, 132
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 146
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	121, 124
Cac8I	GCNNGC	2 cut(s)	6, 132
CviJI	RGCY	3 cut(s)	102, 111, 134
CviKI_1	RGCY	3 cut(s)	102, 111, 134
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	40
FaiI	YATR	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	135, 138
Fsp4HI	GCNGC	2 cut(s)	135, 138
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	2 cut(s)	135, 138
Hpy188I	TCNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	140, 149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 146
LpnPI	CCDG	6 cut(s)	18, 27, 54, 81, 90, 145
Lsp1109I	GCAGC	2 cut(s)	121, 124
MaeI	CTAG	1 cut(s)	131
MboII	GAAGA	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	108, 146
NheI	GCTAGC	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	136, 139
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	142
SatI	GCNGC	2 cut(s)	135, 138
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	5 cut(s)	76, 104, 113, 136, 164
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	8 cut(s)	17, 53, 54, 108, 117, 136, 143, 158
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	40
TseI	GCWGC	2 cut(s)	134, 137
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.