Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Reverse (-)

35470937 .. 35476200

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTGACTCAATTGTGGACTGCAGAAGAGATTATATCTTCGAGAAATGCATGGTTCAGTGGAGACAATGGAAGATAGATATGCCAATGGATATAGTATTAAATCTATACCAGCTCCAGTTGACTGGGGGAATCACAGAGTTACCGGAAGACCTGCTGTGCTTTCCAAACCTCACCAAGATAATCCTGAAGGGAACTGTGGTTGAGGAGAACCACCAATTAGACATTTTACAGAAGCTCCAAAACTTAAGAGTGCTTACCCTTGGATTTAATACCATTAAGGGTTGTGGAGATTTGTTGGTGCCGGGAGATGTAGGAGTTATTCGTTCTTCTGAAGGTGTTGCCCCATTGTTTCAAACTGGAAGCTACGGTAGCTCAAATCTATTCAAGTTGCAAGCTGCTGCAGTCCTTGCAACTTTTGACGGTAATAGAACCCTGTACGCGGTTGTTTGTTTCCATCATGCTTTGGATCTATTTTCTATGCTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

5.25

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	301
AccII	CGCG	1 cut(s)	443
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	477
AcuI	CTGAAG	2 cut(s)	209, 354
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	442
AflII	CTTAAG	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	356, 388
AluBI	AGCT	5 cut(s)	115, 238, 366, 375, 398
AluI	AGCT	5 cut(s)	115, 238, 366, 375, 398
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	477
ApeKI	GCWGC	2 cut(s)	398, 401
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	385, 388
BccI	CCATC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	58
BfmI	CTRYAG	2 cut(s)	22, 402
BfrI	CTTAAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
Bme1390I	CCNGG	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	3 cut(s)	118, 130, 364
BseDI	CCNNGG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseNI	ACTGG	3 cut(s)	118, 130, 364
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	385, 388
Bsh1236I	CGCG	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	301
BsiSI	CCGG	2 cut(s)	146, 305
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	1 cut(s)	443
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	26, 406
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	301
BspTI	CTTAAG	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	118, 130, 364
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	199, 371, 425
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	396, 486
BstFNI	CGCG	1 cut(s)	443
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 410
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	22, 402
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	385, 388
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	396, 486
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	2 cut(s)	52, 461
CviJI	RGCY	5 cut(s)	115, 238, 366, 375, 398
CviKI_1	RGCY	5 cut(s)	115, 238, 366, 375, 398
CviQI	GTAC	1 cut(s)	439
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	209, 354
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	55, 464
FaiI	YATR	8 cut(s)	36, 53, 83, 95, 109, 462, 482, 490
FatI	CATG	2 cut(s)	51, 460
Fnu4HI	GCNGC	2 cut(s)	399, 402
Fsp4HI	GCNGC	2 cut(s)	399, 402
GluI	GCNGC	2 cut(s)	399, 402
GsuI	CTGGAG	1 cut(s)	101
HapII	CCGG	2 cut(s)	146, 305
Hin1II	CATG	2 cut(s)	55, 464
HincII	GTYRAC	2 cut(s)	7, 123
HindII	GTYRAC	2 cut(s)	7, 123
HinfI	GANTC	2 cut(s)	8, 132
HpaII	CCGG	2 cut(s)	146, 305
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	7, 19, 123
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	43, 187
Hpy8I	GTNNAC	3 cut(s)	7, 19, 123
HpyAV	CCTTC	2 cut(s)	184, 329
HpyCH4III	ACNGT	3 cut(s)	199, 371, 425
HpyCH4V	TGCA	5 cut(s)	24, 51, 394, 404, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 410
Hsp92II	CATG	2 cut(s)	55, 464
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	120, 243
Lsp1109I	GCAGC	2 cut(s)	385, 388
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	5 cut(s)	31, 39, 85, 161, 321
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	2 cut(s)	12, 218
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	182, 199
Mph1103I	ATGCAT	1 cut(s)	53
MseI	TTAA	4 cut(s)	101, 248, 270, 279
MspCI	CTTAAG	1 cut(s)	247
MspI	CCGG	2 cut(s)	146, 305
MspR9I	CCNGG	1 cut(s)	306
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	372, 410
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	2 cut(s)	55, 464
NlaIV	GGNNCC	1 cut(s)	303
NsiI	ATGCAT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	2 cut(s)	400, 403
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PspN4I	GGNNCC	1 cut(s)	303
PstI	CTGCAG	2 cut(s)	26, 406
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	4 cut(s)	101, 248, 270, 279
SatI	GCNGC	2 cut(s)	399, 402
Sau3AI	GATC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	8 cut(s)	117, 156, 174, 240, 340, 368, 377, 400
SfcI	CTRYAG	2 cut(s)	22, 402
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	12, 218
SsiI	CCGC	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	199, 371, 425
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	12, 218
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	4 cut(s)	101, 248, 270, 279
Tru9I	TTAA	4 cut(s)	101, 248, 270, 279
TscAI	CASTG	1 cut(s)	65
TseI	GCWGC	2 cut(s)	398, 401
TspRI	CASTG	1 cut(s)	65
Vha464I	CTTAAG	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.