Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8409505.1

Orthogroup ID

OG0004544

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 849

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8409505.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

attcaagagatagtgactaccagaaagctatccaagttggagcactttgaaacagatgaaaaggtaaaaacaattagcttatttgaggaaatatgcggtgtaggtccagctactgcactaaaattatttgaaaaaggacatcgcacattagatgatttgaagaatgaagattcattgacacattcacagaagttggggttaagatattatgaggatatcaaacagaggatcccacaacatgaggctcaagagatggaacttcttctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000726 GO:0003674 GO:0003824 GO:0003887 GO:0005488 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006287 GO:0006289 GO:0006302 GO:0006303 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0016740 GO:0016772 GO:0016779 GO:0016829 GO:0016835 GO:0018130 GO:0019438 GO:0030145 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043167 GO:0043169 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051575 GO:0051716 GO:0071704 GO:0071897 GO:0090304 GO:0097510 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko03450 map03410 map03450

Pfam Domains

Protein Families

BRCT DNA_pol_B_palm DNA_pol_B_thumb DNA_pol_lambd_f HHH_8 LIM

Protein Analysis

89

Amino Acids

10.37

Weight (kDa)

5.54

Isoelectric Point (pI)

25.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g23350 FvH4_6g44671
malus_domestica	MD07G1310100.v1.1
prunus_persica	Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1 Prupe.2G328000_v2.0.a1
pyrus_communis	pycom07g28220
rosa_chinensis	RchiOBHm_Chr1g0384481 RchiOBHm_Chr3g0484611
rosa_laevigata	RLG00000026038
rosa_multiflora	Rmu_co8409505.1_g000001 Rmu_sc0006005.1_g000002 Rmu_sc0027852.1_g000001
rosa_roxburghii	Rroxscaffold_4G00276670 Rroxscaffold_5G00378750 Rroxscaffold_7G00193860
rosa_rugosa	Rorug01G0448000 Rorug01G0448100 Rorug05G0567200
rosa_samantha	Rh1CG444500 Rh2DG337500 Rh2DG481000 Rh3AG228400 Rh7AG441300
rosa_wichuraiana	Rw0G003890 Rw1G039930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	2 cut(s)	223, 236
AgsI	TTSAA	4 cut(s)	5, 50, 131, 160
AluBI	AGCT	3 cut(s)	28, 78, 110
AluI	AGCT	3 cut(s)	28, 78, 110
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	223, 236
AlwNI	CAGNNNCTG	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	2 cut(s)	223, 236
BssMI	GATC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BtgZI	GCGATG	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	104
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	4 cut(s)	28, 78, 110, 245
CviKI_1	RGCY	4 cut(s)	28, 78, 110, 245
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	104
EcoRV	GATATC	1 cut(s)	217
FaeI	CATG	1 cut(s)	242
FaiI	YATR	4 cut(s)	94, 210, 240, 268
FatI	CATG	1 cut(s)	238
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	5, 248
HpyCH4V	TGCA	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	2 cut(s)	34, 120
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	172, 179, 254
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	72, 122
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	79, 205, 219, 235
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	1 cut(s)	200
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	30, 66, 80, 106, 112
SgeI	CNNG	6 cut(s)	17, 33, 46, 119, 251, 260
SinI	GGWCC	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	72, 122
SsiI	CCGC	1 cut(s)	96
TasI	AATT	2 cut(s)	72, 122
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	72, 162, 180
VpaK11BI	GGWCC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.