Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Forward (+)

21171378 .. 21171914

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCCAGAAAGTATGTTGATTTTGGTGGTGGGCATGCAGAGGGTATAGTGGGGGGCCTGCACTTTGGAGGTGTGTTCTTGTTCTGTATGATGATTCTGGTATCCCTCTCGGTCATACCATTTGCAATATTTGCTTGCGGTAGTTCGTCTCGCAAGAAGAAAAGAAAAAGACACGGTGCAGATGGAGGCGGCGGGGACGGTGCAGATGGAGGTGGTGGGGATGGTCCAGATGGTGACGTCGGTGATGGTCCAGATGGCGGTGGTGCAGATGGCCAAGATGGAGGCGGTGGACATCACCATGTAGGCGGGGGACATCATCATGCAGGCGGCCACCATCACCATGTAGGCGGGGGACATCATCACCATGCAGGCGGCCACCATCACCATGTAGGCGGGGGACACCACCACCATGCAGGCGGCGGACATCACCATGTAGGCGGGGGACATCACGGCGGCGGCGGACATCATCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

15.52

Weight (kDa)

6.91

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AcoI	YGGCCR	4 cut(s)	3, 271, 328, 373
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	153
AoxI	GGCC	5 cut(s)	3, 55, 271, 328, 373
AspS9I	GGNCC	3 cut(s)	55, 224, 248
AsuHPI	GGTGA	7 cut(s)	245, 254, 287, 329, 353, 374, 419
AvaII	GGWCC	2 cut(s)	224, 248
BalI	TGGCCA	2 cut(s)	5, 273
BceAI	ACGGC	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	6 cut(s)	190, 328, 373, 418, 454, 457
BlsI	GCNGC	6 cut(s)	191, 329, 374, 419, 455, 458
Bme18I	GGWCC	2 cut(s)	224, 248
BmgT120I	GGNCC	3 cut(s)	55, 224, 248
BmiI	GGNNCC	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	257
BsgI	GTGCAG	4 cut(s)	44, 198, 222, 285
BshFI	GGCC	5 cut(s)	5, 57, 273, 330, 375
BslFI	GGGAC	5 cut(s)	209, 324, 366, 411, 456
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	153
BsmBI	CGTCTC	1 cut(s)	153
BsmFI	GGGAC	5 cut(s)	209, 324, 366, 411, 456
BsnI	GGCC	5 cut(s)	5, 57, 273, 330, 375
BspANI	GGCC	5 cut(s)	5, 57, 273, 330, 375
BspLI	GGNNCC	1 cut(s)	56
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	176, 200
BstACI	GRCGYC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	6 cut(s)	36, 59, 136, 325, 370, 415
BstF5I	GGATG	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	5 cut(s)	5, 57, 273, 330, 375
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	6 cut(s)	36, 59, 136, 325, 370, 415
Cfr13I	GGNCC	3 cut(s)	55, 224, 248
CviAII	CATG	8 cut(s)	35, 299, 320, 341, 365, 386, 410, 431
CviJI	RGCY	5 cut(s)	5, 57, 273, 330, 375
CviKI_1	RGCY	5 cut(s)	5, 57, 273, 330, 375
EaeI	YGGCCR	4 cut(s)	3, 271, 328, 373
EciI	GGCGGA	2 cut(s)	435, 474
Eco47I	GGWCC	2 cut(s)	224, 248
EcoO109I	RGGNCCY	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	8 cut(s)	38, 302, 323, 344, 368, 389, 413, 434
FaqI	GGGAC	5 cut(s)	209, 324, 366, 411, 456
FatI	CATG	8 cut(s)	34, 298, 319, 340, 364, 385, 409, 430
FauI	CCCGC	5 cut(s)	185, 299, 341, 386, 431
FauNDI	CATATG	1 cut(s)	471
Fnu4HI	GCNGC	6 cut(s)	190, 328, 373, 418, 454, 457
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	6 cut(s)	190, 328, 373, 418, 454, 457
GluI	GCNGC	6 cut(s)	190, 328, 373, 418, 454, 457
HaeIII	GGCC	5 cut(s)	5, 57, 273, 330, 375
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	8 cut(s)	38, 302, 323, 344, 368, 389, 413, 434
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	7 cut(s)	245, 254, 287, 329, 353, 374, 419
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188III	TCNNGA	2 cut(s)	227, 251
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	176, 200
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	9 cut(s)	38, 61, 125, 179, 203, 266, 323, 368, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	8 cut(s)	38, 302, 323, 344, 368, 389, 413, 434
LpnPI	CCDG	8 cut(s)	19, 71, 83, 240, 264, 309, 354, 399
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	169
MlsI	TGGCCA	2 cut(s)	5, 273
MluNI	TGGCCA	2 cut(s)	5, 273
MnlI	CCTC	6 cut(s)	34, 62, 116, 179, 203, 275
Mox20I	TGGCCA	2 cut(s)	5, 273
MscI	TGGCCA	2 cut(s)	5, 273
MslI	CAYNNNNRTG	7 cut(s)	297, 318, 339, 363, 384, 408, 429
Msp20I	TGGCCA	2 cut(s)	5, 273
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeI	CATATG	1 cut(s)	471
NlaIII	CATG	8 cut(s)	38, 302, 323, 344, 368, 389, 413, 434
NlaIV	GGNNCC	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	191, 329, 374, 419, 455, 458
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	3 cut(s)	55, 224, 248
RseI	CAYNNNNRTG	7 cut(s)	297, 318, 339, 363, 384, 408, 429
SatI	GCNGC	6 cut(s)	190, 328, 373, 418, 454, 457
Sau96I	GGNCC	3 cut(s)	55, 224, 248
SetI	ASST	3 cut(s)	73, 214, 240
SinI	GGWCC	2 cut(s)	224, 248
SmiMI	CAYNNNNRTG	7 cut(s)	297, 318, 339, 363, 384, 408, 429
SphI	GCATGC	1 cut(s)	38
SspI	AATATT	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	176, 200
TaiI	ACGT	1 cut(s)	240
TaqII	GACCGA	1 cut(s)	100
TauI	GCSGC	6 cut(s)	192, 330, 375, 420, 456, 459
TfiI	GAWTC	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
VpaK11BI	GGWCC	2 cut(s)	224, 248
XceI	RCATGY	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.