Rroxscaffold_2G00114190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002692
Physical Location & Seq
Reverse (-)
40110176 .. 40111268
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114190.1

Sequence Viewer

Length: 363 bp
ATGGCCAGGGGCTTTCCTACTCTAGTTGATGGTACTGGCAATACTCTTCTAGGTCTCTCGCTACCAAGTTCTGGAGGTGTGTTCTTGTTCTGTATGATGATTCTGATATCCCTCTCAGTCATACCAGCTGCAATATTTGCTTGCGGTCATTCCTCTCGCAAGAAAAGACACGGGAGTGGGAATGCATATGCTGGCGGTTATTGGGATGGCGGCGGTGGAGACGGACATCATCATGGAGGCGGTGGACATGACGGCGGTGGAGACGGACATCATCACGGAGGCGGTGGACATGACGGCGGTGGTGGACATGATGGAGGTGGACATGATGGAGGTGGTGGTTGTGGCGGTGGTGGAAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

11.4

Weight (kDa)

6.42

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 9 cut(s) 144, 195, 210, 213, 240, 255, 282, 297, 345
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 3 cut(s) 59, 213, 255
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 128
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 115
BccI CCATC 4 cut(s) 23, 200, 305, 320
BceAI ACGGC 2 cut(s) 268, 310
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 3 cut(s) 59, 213, 255
BfaI CTAG 2 cut(s) 23, 50
BisI GCNGC 2 cut(s) 129, 211
BlsI GCNGC 2 cut(s) 130, 212
Bme1390I CCNGG 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 40
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 3 cut(s) 59, 213, 255
BsmBI CGTCTC 2 cut(s) 213, 255
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 59
BspACI CCGC 9 cut(s) 144, 195, 210, 213, 240, 255, 282, 297, 345
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 142, 193
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 211
BstMAI GTCTC 3 cut(s) 59, 213, 255
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 142, 193
Csp6I GTAC 1 cut(s) 33
CviAII CATG 5 cut(s) 233, 248, 290, 308, 323
CviJI RGCY 3 cut(s) 5, 12, 128
CviKI_1 RGCY 3 cut(s) 5, 12, 128
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 187
Esp3I CGTCTC 2 cut(s) 213, 255
FaeI CATG 5 cut(s) 236, 251, 293, 311, 326
FatI CATG 5 cut(s) 232, 247, 289, 307, 322
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 129, 211
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 129, 211
FspBI CTAG 2 cut(s) 23, 50
GluI GCNGC 2 cut(s) 129, 211
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 5 cut(s) 236, 251, 293, 311, 326
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 4 cut(s) 245, 287, 305, 320
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 4 cut(s) 245, 287, 305, 320
HpyCH4V TGCA 2 cut(s) 131, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 5 cut(s) 236, 251, 293, 311, 326
LpnPI CCDG 5 cut(s) 19, 21, 57, 138, 177
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 23, 50
MboII GAAGA 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 68, 122, 163, 230, 272, 308, 323
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 187
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 2 cut(s) 174, 231
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeI CATATG 1 cut(s) 187
NlaIII CATG 5 cut(s) 236, 251, 293, 311, 326
NsiI ATGCAT 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 174
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 2 cut(s) 130, 212
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 2 cut(s) 174, 231
SatI GCNGC 2 cut(s) 129, 211
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 55, 79, 130, 319, 334
SmiMI CAYNNNNRTG 2 cut(s) 174, 231
SsiI CCGC 9 cut(s) 144, 195, 210, 213, 240, 255, 282, 297, 345
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 23, 50
StyD4I CCNGG 1 cut(s) 5
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 100
TseI GCWGC 1 cut(s) 128
TspGWI ACGGA 3 cut(s) 237, 279, 291
Van91I CCANNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 23, 50
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.