Rw2G027740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002692
Physical Location & Seq
Reverse (-)
43834533 .. 43834850
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027740.1

Sequence Viewer

Length: 318 bp
ATGGCCAGGGGCTTTCCTACTCTAGTTGATGGTACTAGCAGTACTCTTCTAGGTCTCTCGCTACCAAGTTCTGGAGGTGTGTTCTTGTTTTGTATGATGATTCTGATATCCCTCTCGGTCATACCAGCTGCAATATTTGCTTGCGGTCATTCCTCTCGCAAGAAAAGACACGGGAGTGGGAATGCATATGCTGGCAGTTATTGGGATGGCGGCGGTGGAGACGGACATCATCACGGAGGCGGTGGACATGACGGCGGTGGTGGACATGATGGAGGTGGTGGTTGTGGCGGTGGTGGAGATAATCAACCCGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

10.11

Weight (kDa)

6.62

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 6 cut(s) 144, 210, 213, 240, 255, 288
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 34, 43
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 59, 213
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 309
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 23, 200, 263
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 59, 213
BfaI CTAG 3 cut(s) 23, 36, 50
BisI GCNGC 2 cut(s) 129, 211
BlsI GCNGC 2 cut(s) 130, 212
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 2 cut(s) 7, 309
BmrFI CCNGG 2 cut(s) 7, 309
BpmI CTGGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 115
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 59, 213
BsmBI CGTCTC 1 cut(s) 213
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 59
BspACI CCGC 6 cut(s) 144, 210, 213, 240, 255, 288
BspANI GGCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 142, 193
BstF5I GGATG 1 cut(s) 211
BstMAI GTCTC 2 cut(s) 59, 213
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 5, 307
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 142, 193
Csp6I GTAC 2 cut(s) 33, 42
CviAII CATG 2 cut(s) 248, 266
CviJI RGCY 4 cut(s) 5, 12, 128, 315
CviKI_1 RGCY 4 cut(s) 5, 12, 128, 315
CviQI GTAC 2 cut(s) 33, 42
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 2 cut(s) 251, 269
FaiI YATR 6 cut(s) 95, 122, 187, 189, 249, 267
FatI CATG 2 cut(s) 247, 265
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 129, 211
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 129, 211
FspBI CTAG 3 cut(s) 23, 36, 50
GluI GCNGC 2 cut(s) 129, 211
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 309
Hin1II CATG 2 cut(s) 251, 269
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 2 cut(s) 245, 263
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 2 cut(s) 245, 263
HpyCH4V TGCA 2 cut(s) 131, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 251, 269
LpnPI CCDG 4 cut(s) 19, 57, 138, 177
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 3 cut(s) 23, 36, 50
MboII GAAGA 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 68, 122, 163, 230, 266
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 187
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 174
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 7, 309
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 309
NdeI CATATG 1 cut(s) 187
NlaIII CATG 2 cut(s) 251, 269
NsiI ATGCAT 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 174
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 2 cut(s) 130, 212
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 34, 43
RsaNI GTAC 2 cut(s) 33, 42
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 2 cut(s) 129, 211
ScaI AGTACT 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 7, 309
SetI ASST 4 cut(s) 55, 79, 130, 277
SmiMI CAYNNNNRTG 1 cut(s) 174
SsiI CCGC 6 cut(s) 144, 210, 213, 240, 255, 288
SspI AATATT 1 cut(s) 135
SspMI CTAG 3 cut(s) 23, 36, 50
StyD4I CCNGG 2 cut(s) 5, 307
TaqII GACCGA 1 cut(s) 106
TatI WGTACW 1 cut(s) 41
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 100
TseI GCWGC 1 cut(s) 128
TspGWI ACGGA 2 cut(s) 237, 249
Van91I CCANNNNNTGG 1 cut(s) 71
XspI CTAG 3 cut(s) 23, 36, 50
ZrmI AGTACT 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.