Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Reverse (-)

9978780 .. 9979007

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCCAGAGGAACATATGTTGTTCTAGGTGGTGGCCATGCAGAGGAACTAGGCATCATGCAAGACAACTCGGGGGGGATATTTTTGCTCTGCATGATTCTTTTGTCTCTCTCACTTATATCAATGGTCATATTTGCTTGTGGTGATGATGAAGGATCAAGCAAGAAAAGATACGGAGGCAGAGGCAGTGGAGGCGGAGGTTGTGGAGGTGGAGGTGGAGGTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

7.36

Weight (kDa)

5.56

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	2 cut(s)	3, 34
AfiI	CCNNNNNNNGG	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	3, 34
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	70
BalI	TGGCCA	2 cut(s)	5, 36
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	2 cut(s)	26, 50
BmeT110I	CYCGRG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	5, 36
BsiHKCI	CYCGRG	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	5, 36
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	5, 36
BspPI	GGATC	1 cut(s)	163
BssMI	GATC	1 cut(s)	155
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	5, 36
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
CviAII	CATG	3 cut(s)	38, 58, 94
CviJI	RGCY	2 cut(s)	5, 36
CviKI_1	RGCY	2 cut(s)	5, 36
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
EaeI	YGGCCR	2 cut(s)	3, 34
EciI	GGCGGA	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	70
FaeI	CATG	3 cut(s)	41, 61, 97
FaiI	YATR	7 cut(s)	16, 18, 39, 59, 95, 119, 131
FatI	CATG	3 cut(s)	37, 57, 93
FauNDI	CATATG	1 cut(s)	16
FspBI	CTAG	2 cut(s)	26, 50
HaeIII	GGCC	2 cut(s)	5, 36
Hin1II	CATG	3 cut(s)	41, 61, 97
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	146
HpyCH4V	TGCA	3 cut(s)	41, 61, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	41, 61, 97
Kzo9I	GATC	1 cut(s)	155
LpnPI	CCDG	1 cut(s)	19
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	2 cut(s)	26, 50
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MlsI	TGGCCA	2 cut(s)	5, 36
MluNI	TGGCCA	2 cut(s)	5, 36
MnlI	CCTC	8 cut(s)	37, 170, 176, 185, 191, 200, 206, 212
Mox20I	TGGCCA	2 cut(s)	5, 36
MscI	TGGCCA	2 cut(s)	5, 36
Msp20I	TGGCCA	2 cut(s)	5, 36
MwoI	GCNNNNNNNGC	1 cut(s)	192
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	41, 61, 97
PfeI	GAWTC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	155
SetI	ASST	5 cut(s)	31, 202, 211, 217, 223
SfaNI	GCATC	1 cut(s)	63
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	2 cut(s)	26, 50
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	165
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	193
XspI	CTAG	2 cut(s)	26, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.