RLG00000022932

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002692
Physical Location & Seq
Reverse (-)
15345579 .. 15346935
1357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022932

Sequence Viewer

Length: 642 bp
ATGGCTAGAAATTATTTTGTTGTTGGTGGTGATGGTCATGAAGTGGGAGAATTGATCTTGGCAGACAAGTCCGGCGGCATGCTTTTGATTGGCATGGTTCTCATGTCTCTCTCACTCATATCGATGACCATATTTGCTTGTGCATCAAGCAAGAAAAGGGGCAGGGGCGGTGGCGGTGGCGGTGGCGGTGGTGGAGGTGGTGGTTGTGGTGGCAGTGGTGGAGGTGGAGGTGGAGGTGGTGGTTGTGGTGGAGGTGGAGGTGGAGGTGGCGGTTGTGGTGGTGGAGGTGGAAGTGGTGGTGGTGGTTCATCTGCCGGTCTATATAGTGGTCATCAACCACAACAACTGGACTCCGATTCCGATCACCGCCTCAACCATCTCCGATTCCGATCACCGCCTCAACCATTTCCAATTCAGACAAGGTTTGGCCGGGGGAGGGCACCAGCGGGAGTCGACGAGGACGCCGTCGTCTTCTTTGAAGTCGTTGACCCAGCCCTCACCGTGGGGTCATTAGCCATAGCTTTTGCAGACTTCAGAGGCACTCTCTGGCTTGGCCTCGGGTATGGGGCCGCTTTGTTCCCAAGCCTGTTGATGCAAAGCTTCTGTCTATCACGCACCACCGCGCGGTTATCTTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

20.88

Weight (kDa)

8.36

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 453
AccII CGCG 2 cut(s) 623, 625
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 436, 502, 624
AgsI TTSAA 1 cut(s) 479
AluBI AGCT 2 cut(s) 521, 600
AluI AGCT 2 cut(s) 521, 600
Alw26I GTCTC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 557
AoxI GGCC 3 cut(s) 427, 553, 567
ArsI GACNNNNNNTTYG 2 cut(s) 589, 621
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 567
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 41, 356, 384, 490
AvaI CYCGRG 1 cut(s) 557
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 463
BccI CCATC 2 cut(s) 26, 384
BceAI ACGGC 1 cut(s) 449
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 76, 570
BlsI GCNGC 2 cut(s) 77, 571
Bme1390I CCNGG 1 cut(s) 431
BmeT110I CYCGRG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 567
BmiI GGNNCC 2 cut(s) 441, 568
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 2 cut(s) 152, 582
BpiI GAAGAC 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpuMI CCSGG 1 cut(s) 431
Bsa29I ATCGAT 1 cut(s) 122
BsaBI GATNNNNATC 2 cut(s) 360, 388
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 430, 501, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 502, 624
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 351
Bse8I GATNNNNATC 2 cut(s) 360, 388
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 430, 501, 556
BseJI GATNNNNATC 2 cut(s) 360, 388
BseLI CCNNNNNNNGG 3 cut(s) 436, 502, 624
BseNI ACTGG 1 cut(s) 351
BseSI GKGCMC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 2 cut(s) 623, 625
BshFI GGCC 3 cut(s) 429, 555, 569
BshNI GGYRCC 1 cut(s) 439
BshVI ATCGAT 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 557
BsiSI CCGG 3 cut(s) 72, 315, 430
BslI CCNNNNNNNGG 3 cut(s) 436, 502, 624
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 3 cut(s) 429, 555, 569
BsoBI CYCGRG 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 3 cut(s) 54, 361, 389
BspANI GGCC 3 cut(s) 429, 555, 569
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 2 cut(s) 623, 625
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 2 cut(s) 441, 568
BspT107I GGYRCC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 430, 501, 556
BssMI GATC 3 cut(s) 54, 361, 389
BssNI GRCGYC 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 502
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 501
BstFNI CGCG 2 cut(s) 623, 625
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 3 cut(s) 57, 364, 392
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 54, 361, 389
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 2 cut(s) 623, 625
BstV2I GAAGAC 1 cut(s) 463
Bsu15I ATCGAT 1 cut(s) 122
BsuRI GGCC 3 cut(s) 429, 555, 569
BsuTUI ATCGAT 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 501
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 80
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 567
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 1 cut(s) 470
CviAII CATG 4 cut(s) 38, 79, 94, 103
DpnI GATC 3 cut(s) 56, 363, 391
DpnII GATC 3 cut(s) 54, 361, 389
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 557
FaeI CATG 4 cut(s) 41, 82, 97, 106
FatI CATG 4 cut(s) 37, 78, 93, 102
FauI CCCGC 1 cut(s) 439
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 76, 570
Fsp4HI GCNGC 2 cut(s) 76, 570
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 624
GluI GCNGC 2 cut(s) 76, 570
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 3 cut(s) 429, 555, 569
HapII CCGG 3 cut(s) 72, 315, 430
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 4 cut(s) 41, 82, 97, 106
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 2 cut(s) 454, 487
HindII GTYRAC 2 cut(s) 454, 487
HindIII AAGCTT 1 cut(s) 598
HinfI GANTC 4 cut(s) 350, 356, 384, 450
HpaII CCGG 3 cut(s) 72, 315, 430
HphI GGTGA 4 cut(s) 41, 356, 384, 490
Hpy166II GTNNAC 2 cut(s) 454, 487
Hpy188I TCNGA 6 cut(s) 355, 361, 383, 389, 417, 536
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 454, 487
Hpy99I CGWCG 2 cut(s) 458, 470
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4V TGCA 3 cut(s) 143, 527, 595
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 4 cut(s) 41, 82, 97, 106
HspAI GCGC 1 cut(s) 623
Kzo9I GATC 3 cut(s) 54, 361, 389
LweI GCATC 2 cut(s) 152, 582
MaeI CTAG 1 cut(s) 6
MalI GATC 3 cut(s) 56, 363, 391
MboI GATC 3 cut(s) 54, 361, 389
MboII GAAGA 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 3 cut(s) 10, 50, 411
MlyI GAGTC 2 cut(s) 344, 459
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 3 cut(s) 72, 315, 430
MspR9I CCNGG 1 cut(s) 431
MvnI CGCG 2 cut(s) 623, 625
NciI CCSGG 1 cut(s) 431
NdeII GATC 3 cut(s) 54, 361, 389
NlaIII CATG 4 cut(s) 41, 82, 97, 106
NlaIV GGNNCC 2 cut(s) 441, 568
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PagI TCATGA 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfeI GAWTC 2 cut(s) 356, 384
PflFI GACNNNGTC 1 cut(s) 464
PkrI GCNGC 2 cut(s) 77, 571
PleI GAGTC 2 cut(s) 344, 458
PpsI GAGTC 2 cut(s) 344, 458
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 441, 568
PspPI GGNCC 1 cut(s) 567
PsyI GACNNNGTC 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 122
SalI GTCGAC 1 cut(s) 452
SatI GCNGC 2 cut(s) 76, 570
Sau3AI GATC 3 cut(s) 54, 361, 389
Sau96I GGNCC 1 cut(s) 567
SchI GAGTC 2 cut(s) 344, 459
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 442
SfaNI GCATC 2 cut(s) 152, 582
SmiMI CAYNNNNRTG 1 cut(s) 122
SphI GCATGC 1 cut(s) 82
Sse9I AATT 3 cut(s) 10, 50, 411
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 122, 453
TasI AATT 3 cut(s) 10, 50, 411
TauI GCSGC 2 cut(s) 78, 572
TfiI GAWTC 2 cut(s) 356, 384
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 54, 297
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 1 cut(s) 464
XceI RCATGY 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.