Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Forward (+)

42866187 .. 42868374

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG328600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCCAGAAAGTATGTTGTTTTTGGTGGTGGACATGCAGAGGGTATAGTGCCAGAATACTCGGGGGGCCTGCACTCCGGAGGTTTGTTCTTCTTCTGTATGATGATTCTGATAACCCTCTCGATCATACCATTTGCAATATTTGCTTGTGGTACTTCATCTCGCAACAAGAAAAGACATGGTGCAGATGGAGGCGGCGGCCATCACACAGGTGGTGGACATGATGTAGGTGGTGCACATCATGGCGGCGACGCGCATCACCATGTAGGCGGCGCACATCACGACGGCGGCGCACATCACCATGTCCATGTAGGCGGTGGACATGACGGGGGCGGTGGACATCACCACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

11.88

Weight (kDa)

7.07

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	7 cut(s)	195, 198, 246, 270, 288, 315, 333
AcoI	YGGCCR	1 cut(s)	199
AfaI	GTAC	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	348
AleI	CACNNNNGTG	1 cut(s)	210
Alw21I	GWGCWC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	234
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	77
AoxI	GGCC	2 cut(s)	67, 199
ApaLI	GTGCAC	1 cut(s)	234
AspLEI	GCGC	3 cut(s)	256, 275, 293
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	251, 290, 335
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	2 cut(s)	182, 210
BceAI	ACGGC	1 cut(s)	301
BisI	GCNGC	5 cut(s)	196, 199, 247, 271, 289
BlsI	GCNGC	5 cut(s)	197, 200, 248, 272, 290
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmsI	GCATC	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	77
BseAI	TCCGGA	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	238
BsgI	GTGCAG	2 cut(s)	56, 204
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	69, 201
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	78
BsnI	GGCC	2 cut(s)	69, 201
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	7 cut(s)	195, 198, 246, 270, 288, 315, 333
BspANI	GGCC	2 cut(s)	69, 201
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	68
BssMI	GATC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	254
BstHHI	GCGC	3 cut(s)	256, 275, 293
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	38, 352
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	69, 201
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	3 cut(s)	256, 275, 293
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	9 cut(s)	35, 179, 221, 242, 263, 302, 308, 323, 349
CviJI	RGCY	2 cut(s)	69, 201
CviKI_1	RGCY	2 cut(s)	69, 201
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EaeI	YGGCCR	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	67
FaeI	CATG	9 cut(s)	38, 182, 224, 245, 266, 305, 311, 326, 352
FatI	CATG	9 cut(s)	34, 178, 220, 241, 262, 301, 307, 322, 348
Fnu4HI	GCNGC	5 cut(s)	196, 199, 247, 271, 289
Fsp4HI	GCNGC	5 cut(s)	196, 199, 247, 271, 289
GlaI	GCGC	3 cut(s)	255, 274, 292
GluI	GCNGC	5 cut(s)	196, 199, 247, 271, 289
HaeIII	GGCC	2 cut(s)	69, 201
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	256, 275, 293
Hin1II	CATG	9 cut(s)	38, 182, 224, 245, 266, 305, 311, 326, 352
Hin6I	GCGC	3 cut(s)	254, 273, 291
HinP1I	GCGC	3 cut(s)	254, 273, 291
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	251, 290, 335
Hpy166II	GTNNAC	5 cut(s)	32, 218, 236, 320, 338
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	4 cut(s)	6, 78, 121, 281
Hpy8I	GTNNAC	5 cut(s)	32, 218, 236, 320, 338
Hpy99I	CGWCG	2 cut(s)	254, 287
HpyCH4V	TGCA	5 cut(s)	38, 73, 137, 185, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	9 cut(s)	38, 182, 224, 245, 266, 305, 311, 326, 352
HspAI	GCGC	3 cut(s)	254, 273, 291
Kpn2I	TCCGGA	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	123
LpnPI	CCDG	5 cut(s)	19, 66, 83, 91, 195
LweI	GCATC	1 cut(s)	265
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	82, 85
MhlI	GDGCHC	1 cut(s)	238
MnlI	CCTC	4 cut(s)	34, 74, 128, 185
MroI	TCCGGA	1 cut(s)	77
MslI	CAYNNNNRTG	4 cut(s)	210, 261, 300, 306
MspI	CCGG	1 cut(s)	78
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	9 cut(s)	38, 182, 224, 245, 266, 305, 311, 326, 352
NlaIV	GGNNCC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	38, 352
OliI	CACNNNNGTG	1 cut(s)	210
PciI	ACATGT	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	197, 200, 248, 272, 290
PscI	ACATGT	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	4 cut(s)	210, 261, 300, 306
SatI	GCNGC	5 cut(s)	196, 199, 247, 271, 289
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	3 cut(s)	85, 214, 232
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	4 cut(s)	210, 261, 300, 306
SsiI	CCGC	7 cut(s)	195, 198, 246, 270, 288, 315, 333
SspI	AATATT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	122
TauI	GCSGC	5 cut(s)	198, 201, 249, 273, 291
TfiI	GAWTC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	147
VneI	GTGCAC	1 cut(s)	234
XceI	RCATGY	2 cut(s)	38, 352
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.