Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Reverse (-)

40171905 .. 40172829

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCCAGAAAATATGTTGTTTTTGGTGGTGGACATGCAGAGGGTACAGTGCCAGAATACTCGGGGGGCCTGCACTCTGGAGGTTTGTTCTTCTTCTGTATGATGATTCTGATATCCCTCTCGGTCATACCATTAGCAATATTTGCTTGTGGTACTTCATCTCGCAACAAGAAAAGACATGGTGCAGATGGAGGCGGCGGGGATGGTGCAGATGGAGGCGGCGGGGATGGTGCAGATGGAGGTGGCGGCGGCCATCACACAGGTGGTGGACATGACGTAGGTGGTGCACATCATGGCGGCGGCGGGCATCACCATGTAGGCGGCGAACATCATGGCGGCGGTGGACATCACCATGTAGGCGGTGGACATCACCATGTAGGCGGTGGACATCACCACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

12.91

Weight (kDa)

6.73

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	250
AfaI	GTAC	2 cut(s)	46, 154
AflIII	ACRYGT	1 cut(s)	396
AleI	CACNNNNGTG	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	289
Alw44I	GTGCAC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	67, 250
ApaLI	GTGCAC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	4 cut(s)	302, 341, 362, 383
AvaI	CYCGRG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	6 cut(s)	182, 197, 206, 221, 230, 261
BisI	GCNGC	8 cut(s)	196, 220, 247, 250, 298, 301, 322, 337
BlsI	GCNGC	8 cut(s)	197, 221, 248, 251, 299, 302, 323, 338
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	68
BmsI	GCATC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	208, 232
BseSI	GKGCMC	1 cut(s)	289
BsgI	GTGCAG	4 cut(s)	56, 204, 228, 252
BshFI	GGCC	2 cut(s)	69, 252
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	61
BsnI	GGCC	2 cut(s)	69, 252
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	289
BspANI	GGCC	2 cut(s)	69, 252
BspLI	GGNNCC	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	49
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	71, 305
BstF5I	GGATG	2 cut(s)	208, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	38, 400
BstSLI	GKGCMC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	69, 252
BtsCI	GGATG	2 cut(s)	208, 232
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	71, 305
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	45, 153
CviAII	CATG	9 cut(s)	35, 179, 272, 293, 314, 332, 353, 374, 397
CviJI	RGCY	2 cut(s)	69, 252
CviKI_1	RGCY	2 cut(s)	69, 252
CviQI	GTAC	2 cut(s)	45, 153
EaeI	YGGCCR	1 cut(s)	250
Eco32I	GATATC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRV	GATATC	1 cut(s)	114
FaeI	CATG	9 cut(s)	38, 182, 275, 296, 317, 335, 356, 377, 400
FatI	CATG	9 cut(s)	34, 178, 271, 292, 313, 331, 352, 373, 396
FauI	CCCGC	3 cut(s)	191, 215, 296
Fnu4HI	GCNGC	8 cut(s)	196, 220, 247, 250, 298, 301, 322, 337
FokI	GGATG	2 cut(s)	215, 239
Fsp4HI	GCNGC	8 cut(s)	196, 220, 247, 250, 298, 301, 322, 337
GluI	GCNGC	8 cut(s)	196, 220, 247, 250, 298, 301, 322, 337
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	69, 252
Hin1II	CATG	9 cut(s)	38, 182, 275, 296, 317, 335, 356, 377, 400
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	4 cut(s)	302, 341, 362, 383
Hpy166II	GTNNAC	6 cut(s)	32, 269, 287, 344, 365, 386
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	6, 78
Hpy8I	GTNNAC	6 cut(s)	32, 269, 287, 344, 365, 386
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	6 cut(s)	38, 73, 185, 209, 233, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	9 cut(s)	38, 182, 275, 296, 317, 335, 356, 377, 400
LpnPI	CCDG	5 cut(s)	19, 63, 66, 83, 246
LweI	GCATC	1 cut(s)	316
MaeII	ACGT	1 cut(s)	276
MboII	GAAGA	2 cut(s)	82, 85
MhlI	GDGCHC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	34, 74, 128, 185, 209, 233
MslI	CAYNNNNRTG	4 cut(s)	261, 312, 351, 372
MwoI	GCNNNNNNNGC	1 cut(s)	143
NlaIII	CATG	9 cut(s)	38, 182, 275, 296, 317, 335, 356, 377, 400
NlaIV	GGNNCC	1 cut(s)	68
NspI	RCATGY	2 cut(s)	38, 400
OliI	CACNNNNGTG	1 cut(s)	261
PciI	ACATGT	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	8 cut(s)	197, 221, 248, 251, 299, 302, 323, 338
PscI	ACATGT	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	67
RsaI	GTAC	2 cut(s)	46, 154
RsaNI	GTAC	2 cut(s)	45, 153
RseI	CAYNNNNRTG	4 cut(s)	261, 312, 351, 372
SatI	GCNGC	8 cut(s)	196, 220, 247, 250, 298, 301, 322, 337
Sau96I	GGNCC	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	5 cut(s)	85, 244, 265, 279, 283
SfaNI	GCATC	1 cut(s)	316
SmiMI	CAYNNNNRTG	4 cut(s)	261, 312, 351, 372
SspI	AATATT	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	279
TaqII	GACCGA	1 cut(s)	112
TauI	GCSGC	8 cut(s)	198, 222, 249, 252, 300, 303, 324, 339
TfiI	GAWTC	1 cut(s)	106
TscAI	CASTG	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	54
VneI	GTGCAC	1 cut(s)	285
XceI	RCATGY	2 cut(s)	38, 400
XcmI	CCANNNNNNNNNTGG	3 cut(s)	260, 359, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.