FvH4_6g27522

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002692
Physical Location & Seq
Forward (+)
21173366 .. 21174123
758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27522.t1

Sequence Viewer

Length: 333 bp
ATGGCTAGGGAAATTGCTGCTGTAGCTGATAGTACTGATCATGTAGGTGGTCTCTTGCTTAGTAGTTCTGGAGGCGTCTTCTTCCTCTGCATGATGATCCTAATTTCCCTCTCAGCCATATCATTTGTAATCTTTGCTTGTGGTGATTCCTCTGGCAAGAAGAAAGAAAACACTGAGAATAGTGGTAGCCTCGACCAAAAGAAAAAGACGACTAAGAAGGGTGGCCGTAAGGAGACTGGTACTAGTGCAGACGGGGATTTCGTTGATGCTTCTGGTTTTGATGCCGGAGGTTTCGGTGGTGGTGGAGGGTGTGCCGGTTGTGCTGGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

10.88

Weight (kDa)

5.7

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 223
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 34, 241
AhlI ACTAGT 1 cut(s) 242
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 2 cut(s) 56, 227
AlwI GGATC 1 cut(s) 91
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AsuHPI GGTGA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 210
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 56, 227
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 2 cut(s) 6, 243
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmcAI AGTACT 1 cut(s) 34
BmsI GCATC 2 cut(s) 256, 271
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 56
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 126, 165
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 4
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 225
BsiSI CCGG 2 cut(s) 285, 315
BsmAI GTCTC 2 cut(s) 56, 227
BsnI GGCC 1 cut(s) 225
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 37, 96
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 125, 166
BspPI GGATC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 2 cut(s) 37, 96
BssNI GRCGYC 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 75
BstDEI CTNAG 4 cut(s) 59, 112, 174, 213
BstKTI GATC 2 cut(s) 40, 99
BstMAI GTCTC 2 cut(s) 56, 227
BstMBI GATC 2 cut(s) 37, 96
BstMWI GCNNNNNNNGC 2 cut(s) 23, 320
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 314
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 33, 240
CviAII CATG 2 cut(s) 41, 91
CviJI RGCY 5 cut(s) 5, 26, 116, 189, 225
CviKI_1 RGCY 5 cut(s) 5, 26, 116, 189, 225
CviQI GTAC 2 cut(s) 33, 240
DdeI CTNAG 4 cut(s) 59, 112, 174, 213
DpnI GATC 2 cut(s) 39, 98
DpnII GATC 2 cut(s) 37, 96
EaeI YGGCCR 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 44, 94
FaiI YATR 3 cut(s) 42, 92, 119
FatI CATG 2 cut(s) 40, 90
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 6, 243
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 225
HapII CCGG 2 cut(s) 285, 315
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 44, 94
HinfI GANTC 1 cut(s) 146
HpaII CCGG 2 cut(s) 285, 315
HphI GGTGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 90, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 320
HpyF3I CTNAG 4 cut(s) 59, 112, 174, 213
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 44, 94
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 37, 96
LpnPI CCDG 7 cut(s) 54, 138, 222, 258, 298, 309, 328
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 2 cut(s) 256, 271
MaeI CTAG 2 cut(s) 6, 243
MalI GATC 2 cut(s) 39, 98
MboI GATC 2 cut(s) 37, 96
MboII GAAGA 3 cut(s) 70, 73, 172
MluCI AATT 2 cut(s) 12, 102
MnlI CCTC 8 cut(s) 65, 95, 119, 160, 200, 281, 299, 320
MslI CAYNNNNRTG 1 cut(s) 45
MspI CCGG 2 cut(s) 285, 315
MwoI GCNNNNNNNGC 2 cut(s) 23, 320
NdeII GATC 2 cut(s) 37, 96
NlaIII CATG 2 cut(s) 44, 94
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 1 cut(s) 19
RsaI GTAC 2 cut(s) 34, 241
RsaNI GTAC 2 cut(s) 33, 240
RseI CAYNNNNRTG 1 cut(s) 45
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 37, 96
ScaI AGTACT 1 cut(s) 34
SetI ASST 4 cut(s) 28, 49, 292, 331
SfaNI GCATC 2 cut(s) 256, 271
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 45
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 2 cut(s) 12, 102
SspMI CTAG 2 cut(s) 6, 243
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 12, 102
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 1 cut(s) 178
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 178
XspI CTAG 2 cut(s) 6, 243
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.