Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Reverse (-)

10016310 .. 10016639

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G117400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTAGAAAATTTGTTGTTGTGGCCGGTGTCCGTGCAGAGGAAGTAGGTTTCATGCCAGACAACTCGGGAGGCCTACTTTTGTTGTGCATGATTTTTGTTTCCCTCTCACTTGTATCAATGGTCATATTTGCTTGTAGTGATAAAGGATCAAAGAAGAAAAAGCGCCGAGATGACTGTGGTGACTGCGATTTCACCGGTTGTTGTTGTGGTGGAGGCGGTCCATGTGGAGGTGGAGATGGAGGCGGAGGCGGAGATGGAGGGGGAGGCGGAGGCGGAGATGGAGGTGGAGGTGGTGGTGGAGGATGTGGAGGCGGTGGTGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

10.12

Weight (kDa)

5.15

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	219, 246, 252, 270, 276, 315
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	40, 230
AgeI	ACCGGT	1 cut(s)	197
AlwI	GGATC	1 cut(s)	157
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	2 cut(s)	24, 73
ApoI	RAATTY	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	187, 194
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	221
BccI	CCATC	3 cut(s)	233, 251, 275
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 230
Bse118I	RCCGGY	2 cut(s)	26, 197
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	40, 230
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	26, 75
BshTI	ACCGGT	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	27, 198
BslI	CCNNNNNNNGG	2 cut(s)	40, 230
BsnI	GGCC	2 cut(s)	26, 75
BsoBI	CYCGRG	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	149
BspACI	CCGC	6 cut(s)	219, 246, 252, 270, 276, 315
BspANI	GGCC	2 cut(s)	26, 75
BspPI	GGATC	1 cut(s)	157
BsrFI	RCCGGY	2 cut(s)	26, 197
BssAI	RCCGGY	2 cut(s)	26, 197
BssMI	GATC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	26, 75
BtsCI	GGATG	1 cut(s)	311
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	2 cut(s)	26, 197
Cfr13I	GGNCC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	3 cut(s)	55, 91, 225
CviJI	RGCY	3 cut(s)	5, 26, 75
CviKI_1	RGCY	3 cut(s)	5, 26, 75
DpnI	GATC	1 cut(s)	151
DpnII	GATC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	24
EciI	GGCGGA	4 cut(s)	261, 267, 285, 291
Eco147I	AGGCCT	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	67
FaeI	CATG	3 cut(s)	58, 94, 228
FaiI	YATR	4 cut(s)	56, 92, 128, 226
FatI	CATG	3 cut(s)	54, 90, 224
FokI	GGATG	1 cut(s)	318
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	26, 75
HapII	CCGG	2 cut(s)	27, 198
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	58, 94, 228
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HpaII	CCGG	2 cut(s)	27, 198
HphI	GGTGA	2 cut(s)	187, 194
Hpy188III	TCNNGA	1 cut(s)	69
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	2 cut(s)	38, 90
Hsp92II	CATG	3 cut(s)	58, 94, 228
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	149
LpnPI	CCDG	3 cut(s)	40, 72, 211
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	1 cut(s)	151
MboI	GATC	1 cut(s)	149
MboII	GAAGA	1 cut(s)	169
MluCI	AATT	1 cut(s)	11
MspI	CCGG	2 cut(s)	27, 198
NdeII	GATC	1 cut(s)	149
NlaIII	CATG	3 cut(s)	58, 94, 228
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	182
PceI	AGGCCT	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	149
Sau96I	GGNCC	1 cut(s)	221
SetI	ASST	4 cut(s)	52, 235, 289, 295
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	11
SseBI	AGGCCT	1 cut(s)	75
SsiI	CCGC	6 cut(s)	219, 246, 252, 270, 276, 315
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	1 cut(s)	11
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.