RLG00000019114

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002692
Physical Location & Seq
Forward (+)
46663296 .. 46663613
318 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019114

Sequence Viewer

Length: 318 bp
ATGGCCAGGGGCTTTCCTACTGTAGTTGATGGTGCTAGCAGTACTCTTCTAGGTCTCTCGCTACCAAGTTCTGGAGGTGTGTTCTTATTCTGTATGATGATTCTGATATCCTTCTCGGTCGTACCAGCTGCAATATTTGGTTGCGGTCATTCCGCCTCTCGCAAGAAAAGACACTGGAGTGGGAATGCATATGCTGGTGGTTATTGGGATGTTGGCGGTGGAGACGGACATCATCATGGAGGCGGTGGAGATGACGGCGGTGGTGGACATGATGGAGGTGGTGGTTGTGGTGGTTGTGGCGGAGGTGGAGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.14

Weight (kDa)

6.25

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 6 cut(s) 144, 153, 216, 243, 258, 300
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 43, 123
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 59, 216
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 128
AsuNHI GCTAGC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 23, 266
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 59, 216
BfaI CTAG 2 cut(s) 36, 50
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 7
BmtI GCTAGC 1 cut(s) 39
BpmI CTGGAG 2 cut(s) 93, 196
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 71
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 59, 216
BsmBI CGTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 59
BspACI CCGC 6 cut(s) 144, 153, 216, 243, 258, 300
BspANI GGCC 1 cut(s) 5
BspOI GCTAGC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 37
BstF5I GGATG 1 cut(s) 214
BstMAI GTCTC 2 cut(s) 59, 216
BstMCI CGRYCG 1 cut(s) 120
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 42, 122
CviAII CATG 2 cut(s) 236, 269
CviJI RGCY 3 cut(s) 5, 12, 128
CviKI_1 RGCY 3 cut(s) 5, 12, 128
CviQI GTAC 2 cut(s) 42, 122
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
EciI GGCGGA 2 cut(s) 142, 315
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 2 cut(s) 239, 272
FaiI YATR 5 cut(s) 95, 190, 192, 237, 270
FatI CATG 2 cut(s) 235, 268
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 36, 50
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 2 cut(s) 93, 196
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 239, 272
HinfI GANTC 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 131, 188
Hsp92II CATG 2 cut(s) 239, 272
LpnPI CCDG 5 cut(s) 19, 57, 138, 160, 180
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 36, 50
MboII GAAGA 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 68, 166, 233, 269, 296
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 190
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 2 cut(s) 177, 234
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 7
NdeI CATATG 1 cut(s) 190
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 2 cut(s) 239, 272
NsiI ATGCAT 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 177
PctI GAATGC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 43, 123
RsaNI GTAC 2 cut(s) 42, 122
RseI CAYNNNNRTG 2 cut(s) 177, 234
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 7
SetI ASST 5 cut(s) 55, 79, 130, 280, 307
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 2 cut(s) 177, 234
Sse9I AATT 1 cut(s) 313
SsiI CCGC 6 cut(s) 144, 153, 216, 243, 258, 300
SspI AATATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 36, 50
StyD4I CCNGG 1 cut(s) 5
TaaI ACNGT 1 cut(s) 22
TaqII GACCGA 1 cut(s) 106
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 71
XspI CTAG 2 cut(s) 36, 50
ZrmI AGTACT 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.