Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Reverse (-)

9962744 .. 9963250

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G116800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTAGGAACCTTGTTGGTCTAGGTGTTAGTCGTAGACATGCAGATTTATTGCTTCCAAGTGCTGGTGGTGGTCTATACTTGGTTTGTATGATCCTGATGTTCCTTTCAGTAATTTCAGCTATAATACTTTCTTGTGGTACATCGTCTCGCAAGAAGAAAGACAATAGAGGTATCGATGGAGGAGACGGAGATGGAGGAGACGGAGATGGAGGAGATGGAGGAGGCAGAGTTGAAGGAGATGGAGGAGATGGCAGTGGCGGGGCACATGGCCACCATGGCCACGGGGGCGGGGCACATGGCCACCATGGCCACGGGGGCGGGGCACATGGCCACCATGGACACGGGGGCGGGGCACATGGCCACCATGGCCACTGGGGCGGGGCACATGCCCACCATGGCCACGGGGGCGGGGCACATGCCCACCATGGCCACGGGGGGGGGAGGACATGTTGGTGGCGGCCATGGAGTTTTTTAGGAAAGAGATCTTACATAGTTGTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

16.73

Weight (kDa)

8.6

Isoelectric Point (pI)

28.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	37
AciI	CCGC	7 cut(s)	261, 291, 321, 351, 381, 411, 460
AclWI	GGATC	1 cut(s)	88
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	2 cut(s)	65, 439
AflIII	ACRYGT	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	153, 180, 195
AlwI	GGATC	1 cut(s)	88
BaeGI	GKGCMC	6 cut(s)	268, 298, 328, 358, 388, 418
BalI	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
BccI	CCATC	6 cut(s)	173, 188, 203, 212, 236, 245
BcoDI	GTCTC	3 cut(s)	153, 180, 195
BfaI	CTAG	2 cut(s)	6, 23
BglI	GCCNNNNNGGC	7 cut(s)	279, 288, 309, 318, 369, 378, 408
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	11
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 436, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 439
Bse1I	ACTGG	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	65, 439
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	5 cut(s)	198, 213, 228, 237, 261
BseSI	GKGCMC	6 cut(s)	268, 298, 328, 358, 388, 418
BshVI	ATCGAT	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	65, 439
BsmAI	GTCTC	3 cut(s)	153, 180, 195
BsmBI	CGTCTC	3 cut(s)	153, 180, 195
Bsp1286I	GDGCHC	6 cut(s)	268, 298, 328, 358, 388, 418
Bsp143I	GATC	2 cut(s)	93, 485
Bsp19I	CCATGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
BspACI	CCGC	7 cut(s)	261, 291, 321, 351, 381, 411, 460
BspDI	ATCGAT	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	93, 485
BssT1I	CCWWGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
BstKTI	GATC	2 cut(s)	96, 488
BstMAI	GTCTC	3 cut(s)	153, 180, 195
BstMBI	GATC	2 cut(s)	93, 485
BstMWI	GCNNNNNNNGC	7 cut(s)	279, 288, 309, 318, 369, 378, 408
BstNSI	RCATGY	4 cut(s)	44, 392, 422, 453
BstSLI	GKGCMC	6 cut(s)	268, 298, 328, 358, 388, 418
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
Bsu15I	ATCGAT	1 cut(s)	177
BsuTUI	ATCGAT	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 373
ClaI	ATCGAT	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	141
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	2 cut(s)	95, 487
DpnII	GATC	2 cut(s)	93, 485
Eco130I	CCWWGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
EcoT14I	CCWWGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
ErhI	CCWWGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
Esp3I	CGTCTC	3 cut(s)	153, 180, 195
FauI	CCCGC	6 cut(s)	254, 284, 314, 344, 374, 404
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	2 cut(s)	6, 23
GluI	GCNGC	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	7 cut(s)	279, 288, 309, 318, 369, 378, 408
Kzo9I	GATC	2 cut(s)	93, 485
LpnPI	CCDG	3 cut(s)	51, 110, 361
MaeI	CTAG	2 cut(s)	6, 23
MalI	GATC	2 cut(s)	95, 487
MboI	GATC	2 cut(s)	93, 485
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	6 cut(s)	268, 298, 328, 358, 388, 418
MlsI	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
MluCI	AATT	1 cut(s)	114
MluNI	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
MnlI	CCTC	8 cut(s)	164, 176, 191, 206, 215, 218, 239, 438
Mox20I	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
MscI	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
MslI	CAYNNNNRTG	1 cut(s)	454
Msp20I	TGGCCA	9 cut(s)	273, 282, 303, 312, 333, 363, 372, 402, 432
MwoI	GCNNNNNNNGC	7 cut(s)	279, 288, 309, 318, 369, 378, 408
NcoI	CCATGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
NdeII	GATC	2 cut(s)	93, 485
NlaIV	GGNNCC	1 cut(s)	11
NspI	RCATGY	4 cut(s)	44, 392, 422, 453
PciI	ACATGT	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	462
PscI	ACATGT	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
RseI	CAYNNNNRTG	1 cut(s)	454
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	93, 485
SduI	GDGCHC	6 cut(s)	268, 298, 328, 358, 388, 418
SetI	ASST	4 cut(s)	15, 28, 124, 175
SfiI	GGCCNNNNNGGCC	3 cut(s)	279, 309, 369
SmiMI	CAYNNNNRTG	1 cut(s)	454
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	7 cut(s)	261, 291, 321, 351, 381, 411, 460
SspMI	CTAG	2 cut(s)	6, 23
StyI	CCWWGG	7 cut(s)	277, 307, 337, 367, 397, 427, 464
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	114
TauI	GCSGC	1 cut(s)	463
TscAI	CASTG	2 cut(s)	262, 380
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	2 cut(s)	204, 219
TspRI	CASTG	2 cut(s)	262, 380
Van91I	CCANNNNNTGG	1 cut(s)	65
XceI	RCATGY	4 cut(s)	44, 392, 422, 453
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	6, 23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.