RLG00000019110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002692
Physical Location & Seq
Forward (+)
46643557 .. 46643997
441 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019110

Sequence Viewer

Length: 441 bp
ATGGCTAGGGCAATTGCTGCTGTAGGTGATAATTCTGATCATGTAGGTGGTCTTTTGCTACCGAGTAGTTCTGGAGGCGTGTTCTTCCTCTGCATGATGATCCTAATGTCCCTCTCAGTCATATCATTTGTAATCTTTGCTTGTGGTGATTCCTCTGGCAAAAAGAAAGGAGGAAACTCCAAGAATATTGGTGGCCTCGACCAAAAGAAAAAAAAGAATACTGGTGGCAGTAAAAACTATGGGGGTCCTGTGCGTGCGACTGGTATTTATGGAGTTGGCACTGCTAATGGTGGTGATGGAGGTGGACATGGGCATGGTGGGCATGGTGGAGGCGGTGGTTGTGGAGGACACCGCGGTGGTGGAAATGATGGTGGCGGGGGTTGCGGTGGCGGTGGTTGTGGTGGTGGGGGTTGCGGTGGGGGCGGTTGTGGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

13.42

Weight (kDa)

9.08

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 354
AciI CCGC 8 cut(s) 333, 352, 354, 375, 384, 390, 414, 423
AclWI GGATC 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 354
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 3 cut(s) 38, 158, 305
AvaII GGWCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 4
BccI CCATC 2 cut(s) 290, 362
BclI TGATCA 1 cut(s) 37
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 352
Bse1I ACTGG 2 cut(s) 226, 265
BseDI CCNNGG 1 cut(s) 352
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 226, 265
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 195
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 37, 99
BspACI CCGC 8 cut(s) 333, 352, 354, 375, 384, 390, 414, 423
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 128
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 226, 265
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 37, 99
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 354
BstKTI GATC 2 cut(s) 40, 102
BstMBI GATC 2 cut(s) 37, 99
BstMWI GCNNNNNNNGC 4 cut(s) 17, 319, 381, 420
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 245
Cfr42I CCGCGG 1 cut(s) 355
CviAII CATG 5 cut(s) 41, 94, 308, 314, 323
CviJI RGCY 2 cut(s) 5, 195
CviKI_1 RGCY 2 cut(s) 5, 195
DdeI CTNAG 1 cut(s) 115
DpnI GATC 2 cut(s) 39, 101
DpnII GATC 2 cut(s) 37, 99
Eco47I GGWCC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 245
FaeI CATG 5 cut(s) 44, 97, 311, 317, 326
FaiI YATR 8 cut(s) 42, 95, 122, 240, 270, 309, 315, 324
FaqI GGGAC 1 cut(s) 94
FatI CATG 5 cut(s) 40, 93, 307, 313, 322
FauI CCCGC 1 cut(s) 368
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 5 cut(s) 44, 97, 311, 317, 326
HinfI GANTC 1 cut(s) 149
HphI GGTGA 3 cut(s) 38, 158, 305
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 319, 381, 420
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 5 cut(s) 44, 97, 311, 317, 326
Ksp22I TGATCA 1 cut(s) 37
KspI CCGCGG 1 cut(s) 355
Kzo9I GATC 2 cut(s) 37, 99
LpnPI CCDG 5 cut(s) 57, 141, 207, 246, 261
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 6
MalI GATC 2 cut(s) 39, 101
MboI GATC 2 cut(s) 37, 99
MboII GAAGA 1 cut(s) 76
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 31, 436
MnlI CCTC 9 cut(s) 68, 98, 122, 163, 164, 206, 293, 323, 338
MseI TTAA 1 cut(s) 439
MslI CAYNNNNRTG 3 cut(s) 45, 312, 354
MspA1I CMGCKG 1 cut(s) 354
MunI CAATTG 1 cut(s) 12
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 4 cut(s) 17, 319, 381, 420
NdeII GATC 2 cut(s) 37, 99
NlaIII CATG 5 cut(s) 44, 97, 311, 317, 326
NlaIV GGNNCC 1 cut(s) 246
OliI CACNNNNGTG 1 cut(s) 354
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 245
Psp5II RGGWCCY 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
RseI CAYNNNNRTG 3 cut(s) 45, 312, 354
SacII CCGCGG 1 cut(s) 355
SaqAI TTAA 1 cut(s) 439
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 37, 99
Sau96I GGNCC 1 cut(s) 245
SetI ASST 3 cut(s) 28, 49, 304
SfcI CTRYAG 1 cut(s) 21
Sfr303I CCGCGG 1 cut(s) 355
SgrBI CCGCGG 1 cut(s) 355
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 3 cut(s) 45, 312, 354
Sse9I AATT 3 cut(s) 12, 31, 436
SsiI CCGC 8 cut(s) 333, 352, 354, 375, 384, 390, 414, 423
SspI AATATT 1 cut(s) 187
SspMI CTAG 1 cut(s) 6
TaqI TCGA 1 cut(s) 198
TasI AATT 3 cut(s) 12, 31, 436
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TscAI CASTG 1 cut(s) 286
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 245
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.