Rh2AG340900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002692
Physical Location & Seq
Forward (+)
49833422 .. 49833909
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG340900.1

Sequence Viewer

Length: 453 bp
ATGGCTAGGGCAATTGCTGCTGTAGGTGATAGTGCTGATCATGTAGGTGGTCTCTTGCTACCGAGTAGTTCTGGAGGTGTGTTCTTCCTCTGCATGATGATCCTAATGTCCCTCTCAGTCATATCATTTGTAATCTTTGCTTGTGGTGATTCCTCTGGCAAAAAGAAGGGAAACTCCAAGAATATTGGTGGCTTCGACCAAAAGAAAAAAAAGAATACTGGTGGCAGTAAAAACTATGGGGGTCATGTGCGTGCGACTGGTATTTATGGAGTTGGCACTGCTAGTGGTGGTGATGGAGGTGGACAAGGCCATGGTGGGCATGGTGGAGGCGGTGGTTGTGGAGGACACAGCGGTGGTGGAAATGATGGTGGCGGGGGTTGCGGTGGCGCTGGTTGTGGTGGTGGGGGTTGCGGTGGTGGGGGTTGCGGTGGAGGCGGTTGCGGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

13.63

Weight (kDa)

8.85

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 330, 351, 372, 381, 411, 426, 435, 441
AclWI GGATC 1 cut(s) 94
AleI CACNNNNGTG 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 38, 158, 302
BbvI GCAGC 1 cut(s) 4
BccI CCATC 2 cut(s) 287, 359
BclI TGATCA 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 2 cut(s) 6, 282
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 390
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 223, 262
BseDI CCNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 223, 262
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 1 cut(s) 309
BslFI GGGAC 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 309
Bso31I GGTCTC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 37, 99
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 8 cut(s) 330, 351, 372, 381, 411, 426, 435, 441
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 128
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 56
BsrI ACTGG 2 cut(s) 223, 262
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 37, 99
BssT1I CCWWGG 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 310
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 2 cut(s) 40, 102
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 37, 99
BstMWI GCNNNNNNNGC 3 cut(s) 17, 378, 432
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 389
CviAII CATG 5 cut(s) 41, 94, 245, 311, 320
CviJI RGCY 3 cut(s) 5, 192, 309
CviKI_1 RGCY 3 cut(s) 5, 192, 309
DdeI CTNAG 1 cut(s) 115
DpnI GATC 2 cut(s) 39, 101
DpnII GATC 2 cut(s) 37, 99
Eco130I CCWWGG 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 5 cut(s) 44, 97, 248, 314, 323
FaiI YATR 8 cut(s) 42, 95, 122, 237, 246, 267, 312, 321
FaqI GGGAC 1 cut(s) 94
FatI CATG 5 cut(s) 40, 93, 244, 310, 319
FauI CCCGC 1 cut(s) 365
FbaI TGATCA 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 6, 282
GlaI GCGC 1 cut(s) 388
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 1 cut(s) 309
HhaI GCGC 1 cut(s) 389
Hin1II CATG 5 cut(s) 44, 97, 248, 314, 323
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 1 cut(s) 149
HphI GGTGA 3 cut(s) 38, 158, 302
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 378, 432
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 5 cut(s) 44, 97, 248, 314, 323
HspAI GCGC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 2 cut(s) 37, 99
LpnPI CCDG 5 cut(s) 57, 141, 204, 243, 375
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 2 cut(s) 6, 282
MalI GATC 2 cut(s) 39, 101
MboI GATC 2 cut(s) 37, 99
MboII GAAGA 1 cut(s) 76
MfeI CAATTG 1 cut(s) 12
MluCI AATT 2 cut(s) 12, 448
MnlI CCTC 8 cut(s) 68, 98, 122, 163, 290, 320, 335, 425
MseI TTAA 1 cut(s) 451
MslI CAYNNNNRTG 3 cut(s) 45, 249, 351
MspA1I CMGCKG 1 cut(s) 351
MunI CAATTG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 17, 378, 432
NcoI CCATGG 1 cut(s) 310
NdeII GATC 2 cut(s) 37, 99
NlaIII CATG 5 cut(s) 44, 97, 248, 314, 323
OliI CACNNNNGTG 1 cut(s) 351
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 19
RseI CAYNNNNRTG 3 cut(s) 45, 249, 351
SaqAI TTAA 1 cut(s) 451
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 2 cut(s) 37, 99
SetI ASST 4 cut(s) 28, 49, 79, 301
SfcI CTRYAG 1 cut(s) 21
SmiMI CAYNNNNRTG 3 cut(s) 45, 249, 351
Sse9I AATT 2 cut(s) 12, 448
SsiI CCGC 8 cut(s) 330, 351, 372, 381, 411, 426, 435, 441
SspI AATATT 1 cut(s) 184
SspMI CTAG 2 cut(s) 6, 282
StyI CCWWGG 1 cut(s) 310
TaqI TCGA 1 cut(s) 195
TasI AATT 2 cut(s) 12, 448
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 1 cut(s) 451
Tru9I TTAA 1 cut(s) 451
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 17
TspRI CASTG 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 2 cut(s) 6, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.