Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Forward (+)

47389762 .. 47390233

Gene Structure 472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG349500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTAGGGTAATTGCTGCTGTAGGTGATAGTGCTGATCATGTACGTGGTCTCTTGCTACCGAGTAGTTCTGGAGGTGTGTTTTTCCTCTGCATGATGATCCTAATGTCCCTCTCAGTCATATCATTTGTAATCTTTGCTTGTGGTGATTCCTCTGGCAAAAAGAAAGGAAACTCCAAGAATATTGGTGGCCTCGACCAAAAGAAAAAAAAGAATACTGGTGGCAGTAAAAACTATGGGGGTCCTGTGCGTGCGACTGGTATTTATGGAGTTGGCACTGCTAGTGGTGGTGATGGAGGTGGACATGGCCATGGTGGGCATGGTGGAGGCGGTGGTTGCGGAGGACACAGCGGTGGTGGAAATGATGGTGGCGGGGGTTGCGGTGGCGGTGGTTGTGGTGGTGGGGGTTGCGGTGGGGGCGGTTGTGGTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

13.35

Weight (kDa)

9.08

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	330, 339, 351, 372, 381, 387, 411, 420
AclWI	GGATC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	307
AfaI	GTAC	1 cut(s)	45
AleI	CACNNNNGTG	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	2 cut(s)	190, 307
ApeKI	GCWGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	38, 158, 302
AvaII	GGWCC	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	287, 359
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	6, 282
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	223, 262
BseDI	CCNNGG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	223, 262
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	2 cut(s)	192, 309
BslFI	GGGAC	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	192, 309
Bso31I	GGTCTC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	37, 99
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	8 cut(s)	330, 339, 351, 372, 381, 387, 411, 420
BspANI	GGCC	2 cut(s)	192, 309
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	223, 262
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	37, 99
BssT1I	CCWWGG	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	40, 102
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	2 cut(s)	37, 99
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 378, 417
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	192, 309
BtgI	CCRYGG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	5 cut(s)	41, 94, 305, 311, 320
CviJI	RGCY	3 cut(s)	5, 192, 309
CviKI_1	RGCY	3 cut(s)	5, 192, 309
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	2 cut(s)	39, 101
DpnII	GATC	2 cut(s)	37, 99
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	5 cut(s)	44, 97, 308, 314, 323
FaiI	YATR	8 cut(s)	42, 95, 122, 237, 267, 306, 312, 321
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	40, 93, 304, 310, 319
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	2 cut(s)	6, 282
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	192, 309
Hin1II	CATG	5 cut(s)	44, 97, 308, 314, 323
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	3 cut(s)	38, 158, 302
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 378, 417
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	5 cut(s)	44, 97, 308, 314, 323
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	37, 99
LpnPI	CCDG	5 cut(s)	57, 141, 204, 243, 258
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	6, 282
MaeII	ACGT	1 cut(s)	46
MalI	GATC	2 cut(s)	39, 101
MboI	GATC	2 cut(s)	37, 99
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	2 cut(s)	12, 433
MluNI	TGGCCA	1 cut(s)	309
MnlI	CCTC	8 cut(s)	68, 98, 122, 163, 203, 290, 320, 335
Mox20I	TGGCCA	1 cut(s)	309
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	1 cut(s)	436
MslI	CAYNNNNRTG	3 cut(s)	45, 309, 351
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	336, 378, 417
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	37, 99
NlaIII	CATG	5 cut(s)	44, 97, 308, 314, 323
NlaIV	GGNNCC	1 cut(s)	243
OliI	CACNNNNGTG	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	19
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	3 cut(s)	45, 309, 351
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	2 cut(s)	37, 99
Sau96I	GGNCC	1 cut(s)	242
SetI	ASST	4 cut(s)	28, 49, 79, 301
SfcI	CTRYAG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	3 cut(s)	45, 309, 351
Sse9I	AATT	2 cut(s)	12, 433
SsiI	CCGC	8 cut(s)	330, 339, 351, 372, 381, 387, 411, 420
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	6, 282
StyI	CCWWGG	1 cut(s)	310
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	12, 433
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	17
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	6, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.