Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002692

Physical Location & Seq

Genomic Coordinates Reverse (-)

897356 .. 898292

Gene Structure 937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1009600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTAGAACATACGTTGGTCTAGGTGGTGGCCATGCAGGCGAAGTAGCTATCATGATGCCAGATCACAACTCGGGCGGGCTACTTTTGCTCTGCATGATTCTCATGTCCCTCTCACTTATATCAATGGTCATATTTGCTTGTGGTGATAGCTCAGGAAAACCTAGACCTAGAGGCGGCGGTTATACAGGTGGAGCTGGCGGTTGTGGAGGTGGAGGCGGAGGCGGCGGTTGTGGAGGTGGAGGCGGAGGTGGAAGGTGGAGGAGGCGGCGGTTATGGAGGTGGAGGCGGAGGCGGCGGTTGTGGAGGTGGAGGCGGAGACGGCGGTTGTTGAGGTGGAGGTGGAGGCTGTTAAAAAAGAGAGAAGGCATGTCAAATTTATGTTTTCAGAAAAATGAAACAGTAAGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

11.97

Isoelectric Point (pI)

117.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27511 FvH4_6g27521 FvH4_6g27522 FvH4_6g27540 FvH4_6g42280
malus_domestica	MD07G1009600.v1.1
prunus_persica	Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G114200_v2.0.a1 Prupe.3G116800_v2.0.a1 Prupe.3G116900_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117200_v2.0.a1 Prupe.3G117300_v2.0.a1 Prupe.3G117400_v2.0.a1
pyrus_communis	pycom17g26580
rosa_chinensis	RchiOBHm_Chr2g0129811 RchiOBHm_Chr2g0129911 RchiOBHm_Chr2g0129941
rosa_laevigata	RLG00000019105 RLG00000019110 RLG00000019114 RLG00000022932
rosa_roxburghii	Rroxscaffold_2G00114190 Rroxscaffold_2G00114240 Rroxscaffold_2G00114280 Rroxscaffold_2G00114290
rosa_rugosa	Rorug02G0290200 Rorug02G0290200 Rorug02G0290200 Rorug02G0290300
rosa_samantha	Rh2AG340800 Rh2AG340900 Rh2BG349500 Rh2BG349900 Rh2CG328100 Rh2CG328600 Rh2CG328800 Rh2DG367500
rosa_wichuraiana	Rw2G027740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	376, 408
AfiI	CCNNNNNNNGG	1 cut(s)	176
AluBI	AGCT	3 cut(s)	50, 153, 197
AluI	AGCT	3 cut(s)	50, 153, 197
Alw26I	GTCTC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	376, 408
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	4 cut(s)	6, 23, 165, 171
BglI	GCCNNNNNGGC	1 cut(s)	39
BisI	GCNGC	4 cut(s)	178, 226, 269, 296
BlsI	GCNGC	4 cut(s)	179, 227, 270, 297
BmeT110I	CYCGRG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	313
BsmBI	CGTCTC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	33
BsoBI	CYCGRG	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	167
BspHI	TCATGA	1 cut(s)	54
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	40, 80, 199
BstDEI	CTNAG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 88, 225, 295, 322
BstNSI	RCATGY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	40, 80, 199
CciI	TCATGA	1 cut(s)	54
CviAII	CATG	5 cut(s)	35, 55, 97, 106, 370
CviJI	RGCY	7 cut(s)	5, 33, 50, 82, 153, 197, 349
CviKI_1	RGCY	7 cut(s)	5, 33, 50, 82, 153, 197, 349
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	31
EciI	GGCGGA	4 cut(s)	234, 261, 304, 331
Eco88I	CYCGRG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	5 cut(s)	38, 58, 100, 109, 373
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	5 cut(s)	34, 54, 96, 105, 369
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	178, 226, 269, 296
Fsp4HI	GCNGC	4 cut(s)	178, 226, 269, 296
FspBI	CTAG	4 cut(s)	6, 23, 165, 171
GluI	GCNGC	4 cut(s)	178, 226, 269, 296
HaeIII	GGCC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	38, 58, 100, 109, 373
HinfI	GANTC	1 cut(s)	100
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	2 cut(s)	55, 156
HpyAV	CCTTC	2 cut(s)	249, 359
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	38, 96
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 88, 225, 295, 322
HpyF3I	CTNAG	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	5 cut(s)	38, 58, 100, 109, 373
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	5 cut(s)	24, 75, 141, 174, 183
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	4 cut(s)	6, 23, 165, 171
MaeII	ACGT	1 cut(s)	15
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	376, 408
MluNI	TGGCCA	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	2 cut(s)	353, 412
Msp20I	TGGCCA	1 cut(s)	33
MwoI	GCNNNNNNNGC	5 cut(s)	39, 88, 225, 295, 322
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	5 cut(s)	38, 58, 100, 109, 373
NspI	RCATGY	1 cut(s)	373
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	179, 227, 270, 297
SaqAI	TTAA	2 cut(s)	353, 412
SatI	GCNGC	4 cut(s)	178, 226, 269, 296
Sau3AI	GATC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	48
Sse9I	AATT	2 cut(s)	376, 408
SspMI	CTAG	4 cut(s)	6, 23, 165, 171
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	18
TasI	AATT	2 cut(s)	376, 408
TauI	GCSGC	4 cut(s)	180, 228, 271, 298
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	353, 412
Tru9I	TTAA	2 cut(s)	353, 412
TspDTI	ATGAA	1 cut(s)	411
XapI	RAATTY	2 cut(s)	376, 408
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	4 cut(s)	6, 23, 165, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.