Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

21446621 .. 21447863

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAGTATGAAATTCTCATCAGACTACCTCCCTGAAGAAATGATGATCGAAATTCTTCTGCGGCTACCCATCAAATCTCTCCTTCAGTTCACCTCTGTTTGCAAATCTTGGAACTCTCTCATTAAAGGCAATACCTTCATCAAAAACCACCTCAAACTCACTACAAAAAGAATCACCAGAGATGGCCCTCTGCTCCTTCTCAGGCATTGCCCAAGCGAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGCTAAGAGCTTCAATGAGTGTTTCCGGATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGATGATTACCTGACCGAAACCAATACTTTTATTCTATGGAACCCCTCAATTCGAAAGTTCATCACCCTTCCTAAACCTCACATCCCACACTCTCAATACTATACAGTTTATGGGTTTGGATTTGATGCCCAAAGAGATGATTACAAGATTCTGCAGCTAGTGTATGAGGGTCACAACAGAGCTGGCCCTGAAGTTGAGCTCTACTCACTCAGTTCAGGGTCTTGGAAAAGCATCACTGCAGCTTCTCCCAAGTATGAGATTGCTCCAACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTTTCGCAATGTTGTTGTAGGATTTGATGTCTGTCAAGAGGCTTTTCATGAGATTAAACTGCCAAAGGACTTGGCTTCTGAGGTTCCAAACATGTTCATTACAGTTATTGGCAAGTGCCTTGCTGTGCAACACTATGATAGTGTACGTGAGTGTTGCAATCTGTGGGTTATGAGAGAGTATGGTGTGGTGGAATCATGGACAAAGCAACTCTCCATTGATTTTCTCACCCCGAACTTTCGGGTAACAAGGGTTTTGGGATGTAGGAAGAATGGTGAATTTCTTTTAGAAGTTTATAAAGGAAAGAAGGGAGAGATAGTCATTCATGATCCGAAGAAAAACACAAATGAGCTTCTTGGAATTTATACTGATCCGGGGTACACATGTATTGAAACTTACATGGAGAGTCTAGTTTTACTTGATAAAGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

374

Amino Acids

42.89

Weight (kDa)

7.56

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	9 - 44	5.8e-08	F-box-like
F-box	PF00646	10 - 46	1.1e-09	F-box domain
FBA_1	PF07734	87 - 347	3.6e-27	F-box associated beta propeller domain
FBA_3	PF08268	99 - 344	6.6e-28	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	984
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	1010, 1052
AcsI	RAATTY	4 cut(s)	11, 51, 965, 1047
AcuI	CTGAAG	3 cut(s)	54, 68, 564
AfaI	GTAC	3 cut(s)	272, 834, 1067
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	2 cut(s)	780, 1070
AgsI	TTSAA	2 cut(s)	304, 1079
AloI	GAACNNNNNNTCC	2 cut(s)	310, 342
AluBI	AGCT	8 cut(s)	293, 300, 511, 536, 553, 596, 689, 1039
AluI	AGCT	8 cut(s)	293, 300, 511, 536, 553, 596, 689, 1039
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	2 cut(s)	1010, 1052
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	2 cut(s)	184, 538
ApeKI	GCWGC	2 cut(s)	508, 593
ApoI	RAATTY	4 cut(s)	11, 51, 965, 1047
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	2 cut(s)	54, 690
AspS9I	GGNCC	2 cut(s)	185, 539
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	5 cut(s)	82, 166, 409, 907, 974
AsuII	TTCGAA	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	1057, 1090
BanII	GRGCYC	2 cut(s)	222, 555
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	520, 605
BccI	CCATC	2 cut(s)	77, 176
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	2 cut(s)	512, 1097
BfmI	CTRYAG	2 cut(s)	506, 591
BisI	GCNGC	3 cut(s)	62, 509, 594
BlsI	GCNGC	3 cut(s)	63, 510, 595
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	1062
BmgT120I	GGNCC	2 cut(s)	185, 539
BmiI	GGNNCC	2 cut(s)	395, 774
BmrFI	CCNGG	1 cut(s)	1062
BmsI	GCATC	2 cut(s)	469, 594
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
Bpu14I	TTCGAA	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	836
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	1061
BsaWI	WCCGGW	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	3 cut(s)	205, 340, 703
BseAI	TCCGGA	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	1061
BseGI	GGATG	2 cut(s)	435, 953
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	3 cut(s)	205, 340, 703
BseMII	CTCAG	5 cut(s)	214, 366, 577, 647, 759
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	520, 605
BshFI	GGCC	2 cut(s)	186, 540
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	316, 1061
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	186, 540
Bso31I	GGTCTC	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	222, 555
Bsp13I	TCCGGA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	45, 1015, 1057
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	186, 540
BspCNI	CTCAG	5 cut(s)	213, 365, 576, 646, 760
BspEI	TCCGGA	1 cut(s)	315
BspHI	TCATGA	2 cut(s)	736, 1012
BspLI	GGNNCC	2 cut(s)	395, 774
BspMAI	CTGCAG	2 cut(s)	510, 595
BspPI	GGATC	2 cut(s)	1010, 1052
BspT104I	TTCGAA	1 cut(s)	406
BspTNI	GGTCTC	1 cut(s)	636
BsrDI	GCAATG	3 cut(s)	205, 340, 703
BssECI	CCNNGG	1 cut(s)	1061
BssMI	GATC	3 cut(s)	45, 1015, 1057
Bst4CI	ACNGT	2 cut(s)	460, 793
BstBAI	YACGTR	1 cut(s)	836
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	2 cut(s)	218, 538
BstDEI	CTNAG	7 cut(s)	200, 294, 352, 563, 633, 675, 768
BstF5I	GGATG	2 cut(s)	435, 953
BstKTI	GATC	3 cut(s)	48, 1018, 1060
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	3 cut(s)	45, 1015, 1057
BstNSI	RCATGY	2 cut(s)	784, 1074
BstSCI	CCNGG	1 cut(s)	1060
BstSFI	CTRYAG	2 cut(s)	506, 591
BstV1I	GCAGC	2 cut(s)	520, 605
BstXI	CCANNNNNNTGG	1 cut(s)	627
BsuRI	GGCC	2 cut(s)	186, 540
BtsCI	GGATG	2 cut(s)	435, 953
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	2 cut(s)	218, 538
CciI	TCATGA	2 cut(s)	736, 1012
Cfr13I	GGNCC	2 cut(s)	185, 539
Csp6I	GTAC	3 cut(s)	271, 833, 1066
CviAII	CATG	6 cut(s)	737, 781, 885, 1013, 1071, 1087
CviQI	GTAC	3 cut(s)	271, 833, 1066
DdeI	CTNAG	7 cut(s)	200, 294, 352, 563, 633, 675, 768
DpnI	GATC	3 cut(s)	47, 1017, 1059
DpnII	GATC	3 cut(s)	45, 1015, 1057
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	222, 555
Eco31I	GGTCTC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	3 cut(s)	54, 68, 564
EcoICRI	GAGCTC	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	222, 555
FaeI	CATG	6 cut(s)	740, 784, 888, 1016, 1074, 1090
FatI	CATG	6 cut(s)	736, 780, 884, 1012, 1070, 1086
Fnu4HI	GCNGC	3 cut(s)	62, 509, 594
FokI	GGATG	2 cut(s)	422, 960
FriOI	GRGCYC	2 cut(s)	222, 555
Fsp4HI	GCNGC	3 cut(s)	62, 509, 594
FspBI	CTAG	2 cut(s)	512, 1097
GluI	GCNGC	3 cut(s)	62, 509, 594
HaeIII	GGCC	2 cut(s)	186, 540
HapII	CCGG	2 cut(s)	316, 1061
Hin1II	CATG	6 cut(s)	740, 784, 888, 1016, 1074, 1090
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	4 cut(s)	171, 502, 881, 1093
HpaII	CCGG	2 cut(s)	316, 1061
HphI	GGTGA	5 cut(s)	82, 166, 409, 907, 974
Hpy166II	GTNNAC	3 cut(s)	90, 833, 1068
Hpy188I	TCNGA	4 cut(s)	22, 355, 769, 1020
Hpy188III	TCNNGA	4 cut(s)	316, 725, 737, 1013
Hpy8I	GTNNAC	3 cut(s)	90, 833, 1068
HpyAV	CCTTC	6 cut(s)	92, 145, 206, 271, 431, 988
HpyCH4III	ACNGT	2 cut(s)	460, 793
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	6 cut(s)	102, 333, 508, 593, 817, 846
HpyF3I	CTNAG	7 cut(s)	200, 294, 352, 563, 633, 675, 768
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	6 cut(s)	740, 784, 888, 1016, 1074, 1090
Kpn2I	TCCGGA	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	45, 1015, 1057
LmnI	GCTCC	2 cut(s)	198, 622
Lsp1109I	GCAGC	2 cut(s)	520, 605
LweI	GCATC	2 cut(s)	469, 594
MaeI	CTAG	2 cut(s)	512, 1097
MaeII	ACGT	1 cut(s)	835
MaeIII	GTNAC	2 cut(s)	524, 931
MalI	GATC	3 cut(s)	47, 1017, 1059
MboI	GATC	3 cut(s)	45, 1015, 1057
MboII	GAAGA	4 cut(s)	47, 47, 967, 1033
MhlI	GDGCHC	2 cut(s)	222, 555
MluCI	AATT	5 cut(s)	11, 51, 402, 965, 1047
MlyI	GAGTC	1 cut(s)	1102
MmeI	TCCRAC	1 cut(s)	644
MroI	TCCGGA	1 cut(s)	315
MroXI	GAANNNNTTC	2 cut(s)	54, 690
MseI	TTAA	4 cut(s)	123, 341, 645, 744
MspI	CCGG	2 cut(s)	316, 1061
MspR9I	CCNGG	1 cut(s)	1062
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	3 cut(s)	45, 1015, 1057
NlaIII	CATG	6 cut(s)	740, 784, 888, 1016, 1074, 1090
NlaIV	GGNNCC	2 cut(s)	395, 774
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	2 cut(s)	784, 1074
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	2 cut(s)	736, 1012
PciI	ACATGT	2 cut(s)	780, 1070
PdmI	GAANNNNTTC	2 cut(s)	54, 690
PfeI	GAWTC	3 cut(s)	171, 502, 881
PkrI	GCNGC	3 cut(s)	63, 510, 595
PleI	GAGTC	1 cut(s)	1101
PpsI	GAGTC	1 cut(s)	1101
Ppu21I	YACGTR	1 cut(s)	836
PscI	ACATGT	2 cut(s)	780, 1070
PshBI	ATTAAT	1 cut(s)	341
PsiI	TTATAA	1 cut(s)	984
Psp124BI	GAGCTC	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	395, 774
PspPI	GGNCC	2 cut(s)	185, 539
PstI	CTGCAG	2 cut(s)	510, 595
RsaI	GTAC	3 cut(s)	272, 834, 1067
RsaNI	GTAC	3 cut(s)	271, 833, 1066
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	123, 341, 645, 744
SatI	GCNGC	3 cut(s)	62, 509, 594
Sau3AI	GATC	3 cut(s)	45, 1015, 1057
Sau96I	GGNCC	2 cut(s)	185, 539
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	1102
ScrFI	CCNGG	1 cut(s)	1062
SduI	GDGCHC	2 cut(s)	222, 555
SfaNI	GCATC	2 cut(s)	469, 594
SfcI	CTRYAG	2 cut(s)	506, 591
SfuI	TTCGAA	1 cut(s)	406
Sse9I	AATT	5 cut(s)	11, 51, 402, 965, 1047
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	512, 1097
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	1060
TaaI	ACNGT	2 cut(s)	460, 793
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	2 cut(s)	48, 406
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	5 cut(s)	11, 51, 402, 965, 1047
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	3 cut(s)	171, 502, 881
Tru1I	TTAA	4 cut(s)	123, 341, 645, 744
Tru9I	TTAA	4 cut(s)	123, 341, 645, 744
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	508, 593
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	7 cut(s)	23, 127, 403, 652, 725, 775, 1001
TspRI	CASTG	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	4 cut(s)	11, 51, 965, 1047
XceI	RCATGY	2 cut(s)	784, 1074
XmnI	GAANNNNTTC	2 cut(s)	54, 690
XspI	CTAG	2 cut(s)	512, 1097
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.