Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

9152786 .. 9153950

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G110600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTCAGAGTACCTTCCTCCAGAAATCATAACCCAAATTCTTCTTAGGCTACCCATCAAATCTCTTCTTCAGTGCACCTCTATCTGCAAATCTTGGAACTCCCTAATTAAACACACTAGATTCATCAACAACCACCTTAACCTCAATTTAGACAAAACAAGCAATTCCCCTTTGCTCCTTCTCAGGCACTGCCCCAAGGACCCCACTAGAGAGCTCTATTCTCTACACTTAGACAATGGTTCATTCCAAGAACACTCAAAGCCAGAGCTTCCAGTTCAGAGCCTCAATGAGTGTTTCCGAATCGTGGGTTCGTGCAACGGATTGATTCTCCTCTCGGATGATTACTTCACAGATTACAACATGTTTGTTCTATGGAACCCCTCCATTAGAAAGTTCATCACGCTTGCTAAGCCTCATGTCCCAAAATCTCCCCATCATTCTGTTTATGGCTTTGGCTTTGATTCTAAGAAAAATGATTACAAGGTAGTAAGACTGGTGTATCTCCGCCAAAATGAAGGCCAAGCTTGCCCGAAAATCGAGCTTTATTCGCTAAACTCAGGGTCTTGGAAAAGCATTACATCAGCTGCTCCCAGTTATCAGATTGCTCAAAACTTTCGGGCTCAAGTTTTTGTCAATGGGGCTGTCCATTGGGTTGCGTCTTGTAAGAAAGGAAATTGTTTTCGCAATGTGGTTTTGTCCTTTGATATGAGTAATGAGACTTTCCAGGAGATTGAGCTGCCAGAAGACTTAGCTTGTGAGTTGCCAACTAAGTACATGCCCATTTCGGCTGCCGGCAAGTCCATTTGTGTAAAGCACTTTGATCAAAATAGACATACTATGTGGGTTATGAGAGAGTATGGGGTCGTGGAATCTTGGGAAAAGCAAGTCTCTGTTGATGTACATGTCACTCCCAATTTCACTCCCAAATTCAGAGTACTGCAGGTTTTGGGGTGTAGGAAAAATAATGGTGAGTTTCTATTAGAAAGGTATGACCATGGAAGAAAGATTGGAGAGTTAGTCTCTCATGATCCCAAGAAGAACACAAATGAGTTTCTTGGAGTTCACACAGATCCAGGGTATTCATGTATTGTATATTACACGGAAAGCCTAGTTTTGCTAGATAAGATGAGCAGATCCATGCAGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

384

Amino Acids

43.99

Weight (kDa)

8.61

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
AciI	CCGC	1 cut(s)	505
AclWI	GGATC	3 cut(s)	1022, 1064, 1128
AcsI	RAATTY	2 cut(s)	36, 926
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	4 cut(s)	11, 773, 900, 936
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	2 cut(s)	360, 901
AjnI	CCWGG	2 cut(s)	723, 1072
AluBI	AGCT	7 cut(s)	214, 268, 524, 541, 584, 736, 752
AluI	AGCT	7 cut(s)	214, 268, 524, 541, 584, 736, 752
Alw21I	GWGCWC	2 cut(s)	77, 216
Alw26I	GTCTC	3 cut(s)	710, 892, 1024
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	3 cut(s)	1022, 1064, 1128
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	3 cut(s)	584, 736, 788
ApoI	RAATTY	2 cut(s)	36, 926
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	980
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BanII	GRGCYC	2 cut(s)	216, 622
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	77, 216
BbvI	GCAGC	3 cut(s)	571, 723, 775
BccI	CCATC	2 cut(s)	62, 441
BciT130I	CCWGG	2 cut(s)	725, 1074
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	3 cut(s)	710, 892, 1024
BfaI	CTAG	4 cut(s)	117, 207, 1109, 1118
BfmI	CTRYAG	1 cut(s)	938
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	3 cut(s)	585, 737, 789
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	586, 738, 790
BmcAI	AGTACT	1 cut(s)	936
Bme1390I	CCNGG	2 cut(s)	725, 1074
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	201, 377
BmrFI	CCNGG	2 cut(s)	725, 1074
BmrI	ACTGGG	1 cut(s)	585
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	750
BplI	GAGNNNNNCTC	2 cut(s)	1004, 1036
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	195, 994, 1073
BsaXI	ACNNNNNCTCC	2 cut(s)	1002, 1032
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	3 cut(s)	272, 498, 591
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	2 cut(s)	725, 1074
BseDI	CCNNGG	3 cut(s)	195, 994, 1073
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	691
BseMII	CTCAG	2 cut(s)	196, 570
BseNI	ACTGG	3 cut(s)	272, 498, 591
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	571, 723, 775
BshFI	GGCC	1 cut(s)	519
BsiHKAI	GWGCWC	2 cut(s)	77, 216
BsiSI	CCGG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	3 cut(s)	710, 892, 1024
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	519
Bsp1286I	GDGCHC	3 cut(s)	77, 216, 622
Bsp1407I	TGTACA	1 cut(s)	898
Bsp143I	GATC	4 cut(s)	820, 1027, 1069, 1133
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	1 cut(s)	505
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	2 cut(s)	195, 569
BspHI	TCATGA	2 cut(s)	1024, 1148
BspLI	GGNNCC	2 cut(s)	201, 377
BspMAI	CTGCAG	1 cut(s)	942
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	3 cut(s)	1022, 1064, 1128
BsrDI	GCAATG	1 cut(s)	691
BsrFI	RCCGGY	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	272, 498, 591
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	3 cut(s)	195, 994, 1073
BssMI	GATC	4 cut(s)	820, 1027, 1069, 1133
BssT1I	CCWWGG	2 cut(s)	195, 994
Bst2UI	CCWGG	2 cut(s)	725, 1074
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	898
BstC8I	GCNNGC	3 cut(s)	405, 526, 793
BstDEI	CTNAG	8 cut(s)	44, 182, 229, 408, 465, 556, 748, 768
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	4 cut(s)	823, 1030, 1072, 1136
BstMAI	GTCTC	3 cut(s)	710, 892, 1024
BstMBI	GATC	4 cut(s)	820, 1027, 1069, 1133
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 525, 547
BstNI	CCWGG	2 cut(s)	725, 1074
BstNSI	RCATGY	3 cut(s)	364, 778, 905
BstSCI	CCNGG	2 cut(s)	723, 1072
BstSFI	CTRYAG	1 cut(s)	938
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	571, 723, 775
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	2 cut(s)	1069, 1133
BstYI	RGATCY	2 cut(s)	1069, 1133
BsuRI	GGCC	1 cut(s)	519
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	77, 187
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	3 cut(s)	405, 526, 793
CaiI	CAGNNNCTG	1 cut(s)	189
CciI	TCATGA	2 cut(s)	1024, 1148
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	4 cut(s)	10, 772, 899, 935
CviAII	CATG	9 cut(s)	361, 416, 775, 902, 995, 1025, 1083, 1138, 1149
CviQI	GTAC	4 cut(s)	10, 772, 899, 935
DdeI	CTNAG	8 cut(s)	44, 182, 229, 408, 465, 556, 748, 768
DpnI	GATC	4 cut(s)	822, 1029, 1071, 1135
DpnII	GATC	4 cut(s)	820, 1027, 1069, 1133
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	195, 994
Eco24I	GRGCYC	2 cut(s)	216, 622
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	723, 1072
EcoT14I	CCWWGG	2 cut(s)	195, 994
EcoT38I	GRGCYC	2 cut(s)	216, 622
ErhI	CCWWGG	2 cut(s)	195, 994
FaeI	CATG	9 cut(s)	364, 419, 778, 905, 998, 1028, 1086, 1141, 1152
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	9 cut(s)	360, 415, 774, 901, 994, 1024, 1082, 1137, 1148
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	585, 737, 789
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	2 cut(s)	216, 622
Fsp4HI	GCNGC	3 cut(s)	585, 737, 789
FspBI	CTAG	4 cut(s)	117, 207, 1109, 1118
GluI	GCNGC	3 cut(s)	585, 737, 789
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	792
HgaI	GACGC	1 cut(s)	645
Hin1II	CATG	9 cut(s)	364, 419, 778, 905, 998, 1028, 1086, 1141, 1152
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	5 cut(s)	120, 300, 325, 461, 869
HpaII	CCGG	1 cut(s)	792
HphI	GGTGA	1 cut(s)	980
Hpy166II	GTNNAC	2 cut(s)	75, 1063
Hpy188I	TCNGA	6 cut(s)	7, 279, 299, 337, 600, 932
Hpy188III	TCNNGA	3 cut(s)	20, 1025, 1149
Hpy8I	GTNNAC	2 cut(s)	75, 1063
HpyAV	CCTTC	3 cut(s)	23, 188, 509
HpyCH4V	TGCA	5 cut(s)	75, 87, 315, 940, 1141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 525, 547
HpyF3I	CTNAG	8 cut(s)	44, 182, 229, 408, 465, 556, 748, 768
Hsp92II	CATG	9 cut(s)	364, 419, 778, 905, 998, 1028, 1086, 1141, 1152
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	4 cut(s)	820, 1027, 1069, 1133
LmnI	GCTCC	2 cut(s)	180, 592
Lsp1109I	GCAGC	3 cut(s)	571, 723, 775
MaeI	CTAG	4 cut(s)	117, 207, 1109, 1118
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	4 cut(s)	822, 1029, 1071, 1135
MboI	GATC	4 cut(s)	820, 1027, 1069, 1133
MboII	GAAGA	6 cut(s)	32, 56, 59, 755, 1011, 1048
MflI	RGATCY	2 cut(s)	1069, 1133
MhlI	GDGCHC	3 cut(s)	77, 216, 622
MluCI	AATT	7 cut(s)	36, 105, 145, 163, 673, 913, 926
MnlI	CCTC	7 cut(s)	27, 88, 152, 293, 341, 391, 423
MroNI	GCCGGC	1 cut(s)	791
MseI	TTAA	2 cut(s)	108, 138
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	2 cut(s)	725, 1074
MvaI	CCWGG	2 cut(s)	725, 1074
MwoI	GCNNNNNNNGC	3 cut(s)	409, 525, 547
NaeI	GCCGGC	1 cut(s)	793
NcoI	CCATGG	1 cut(s)	994
NdeII	GATC	4 cut(s)	820, 1027, 1069, 1133
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	9 cut(s)	364, 419, 778, 905, 998, 1028, 1086, 1141, 1152
NlaIV	GGNNCC	2 cut(s)	201, 377
NmuCI	GTSAC	1 cut(s)	904
NspI	RCATGY	3 cut(s)	364, 778, 905
PagI	TCATGA	2 cut(s)	1024, 1148
PciI	ACATGT	2 cut(s)	360, 901
PdiI	GCCGGC	1 cut(s)	793
PfeI	GAWTC	5 cut(s)	120, 300, 325, 461, 869
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	3 cut(s)	586, 738, 790
PpuMI	RGGWCCY	1 cut(s)	199
PscI	ACATGT	2 cut(s)	360, 901
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	723, 1072
PspGI	CCWGG	2 cut(s)	723, 1072
PspN4I	GGNNCC	2 cut(s)	201, 377
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	942
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	1069, 1133
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	4 cut(s)	11, 773, 900, 936
RsaNI	GTAC	4 cut(s)	10, 772, 899, 935
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	108, 138
SatI	GCNGC	3 cut(s)	585, 737, 789
Sau3AI	GATC	4 cut(s)	820, 1027, 1069, 1133
Sau96I	GGNCC	1 cut(s)	199
ScaI	AGTACT	1 cut(s)	936
ScrFI	CCNGG	2 cut(s)	725, 1074
SduI	GDGCHC	3 cut(s)	77, 216, 622
SfcI	CTRYAG	1 cut(s)	938
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	7 cut(s)	36, 105, 145, 163, 673, 913, 926
SsiI	CCGC	1 cut(s)	505
SspMI	CTAG	4 cut(s)	117, 207, 1109, 1118
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	723, 1072
StyI	CCWWGG	2 cut(s)	195, 994
TaqI	TCGA	1 cut(s)	537
TasI	AATT	7 cut(s)	36, 105, 145, 163, 673, 913, 926
TatI	WGTACW	3 cut(s)	771, 898, 934
TfiI	GAWTC	5 cut(s)	120, 300, 325, 461, 869
Tru1I	TTAA	2 cut(s)	108, 138
Tru9I	TTAA	2 cut(s)	108, 138
TscAI	CASTG	2 cut(s)	77, 194
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	3 cut(s)	584, 736, 788
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	6 cut(s)	112, 231, 385, 528, 1071, 1137
TspGWI	ACGGA	2 cut(s)	333, 1115
TspRI	CASTG	2 cut(s)	77, 194
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	36, 926
XceI	RCATGY	3 cut(s)	364, 778, 905
XspI	CTAG	4 cut(s)	117, 207, 1109, 1118
ZrmI	AGTACT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.