Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

47428432 .. 47429592

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50268

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGCATGGAATTCTCATCATGCTACCTTCCTGAAGAAATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCACCTCTGTTTCCAAATATTGGAACTCCCTTATTAAACACAATACCTTCATCAAAGACCACCTCAAACTCACTTCAAACAGAATCGCCAGGGATGGCCCTTTGCTCCTTCTCAGGCATTGCCCCAGAGAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTACAGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCCTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCGTTCTATGGAACCCCTCAATTCGAAAGTCCATCACTCTTCCTAAACCTCATATCCGACACTCTGAATACTATACAGTTTATGGGTTTGGGTTTGATGCTAAGAAAGATGATTACAAGATAGTGCAGTTGGTGTATGAAGGTCACAACAGAGCTGGCCCTGAAGTTGTGCTCTACTCACTCAATTCAGGGTCTTGGAAAGCCATTACTGCAGCTTCTCCCAAGCATGAGATTGCTCCGACGATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTATGACAATGTTGTTTTGGGATTTAATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAAGGGACTTGGCTTCTGAGGTGCCAGACATGGAACTCATTGCAGTTAGTGGCAAGTCCCTTGCTCTGCAACACTATGATAGTAAACATAAGTGTTGCAATGTATGGGTTATGAGAGAGTATGGTGTGGTGGAGTCATGGACAAAGCAATTCTCCATTGATTTTCTCACCCCGAACTTTCGGGTAACAAAGGTTTTGGGGTCTAGGAAGAATGGTGAATTTCTTTTAGAAACGTATAAAGCAAAGAAGGGAGAGATAGTCCTTCATGATCCCAAGAAAAACACAAATGAGCATCTTGGAATTTATACAGATCCAGGGTACACAAGTCTTGAACATTACATGGAAAGTCTAGTTTTGCTTGATAAAGCAACTTCATTTGCAGATTCCATGGAGCAAGAAGAGGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

386

Amino Acids

44.49

Weight (kDa)

6.16

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	9 - 44	4.8e-07	F-box-like
F-box	PF00646	10 - 46	2.1e-08	F-box domain
FBA_1	PF07734	89 - 345	2.8e-28	F-box associated beta propeller domain
FBA_3	PF08268	93 - 347	7.1e-27	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	628
AccB1I	GGYRCC	1 cut(s)	772
AccB7I	CCANNNNNTGG	1 cut(s)	108
AclWI	GGATC	2 cut(s)	1013, 1055
AcsI	RAATTY	4 cut(s)	11, 51, 968, 1050
AcuI	CTGAAG	3 cut(s)	54, 68, 564
AfaI	GTAC	2 cut(s)	272, 1070
AfiI	CCNNNNNNNGG	2 cut(s)	108, 322
AgsI	TTSAA	3 cut(s)	165, 304, 1082
AjnI	CCWGG	2 cut(s)	176, 1063
AluBI	AGCT	5 cut(s)	293, 300, 536, 596, 689
AluI	AGCT	5 cut(s)	293, 300, 536, 596, 689
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	81, 365, 636
AlwI	GGATC	2 cut(s)	1013, 1055
AoxI	GGCC	2 cut(s)	184, 538
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	4 cut(s)	11, 51, 968, 1050
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	185, 539
AsuHPI	GGTGA	3 cut(s)	82, 910, 977
AsuII	TTCGAA	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	1060, 1093
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	3 cut(s)	77, 176, 422
BciT130I	CCWGG	2 cut(s)	178, 1065
BcoDI	GTCTC	3 cut(s)	81, 365, 636
BfaI	CTAG	2 cut(s)	954, 1100
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	1 cut(s)	594
BlsI	GCNGC	1 cut(s)	595
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	2 cut(s)	178, 1065
BmgT120I	GGNCC	2 cut(s)	185, 539
BmiI	GGNNCC	3 cut(s)	328, 395, 774
BmrFI	CCNGG	2 cut(s)	178, 1065
BmsI	GCATC	2 cut(s)	469, 1051
Bpu14I	TTCGAA	1 cut(s)	406
BsaI	GGTCTC	2 cut(s)	365, 636
BsaJI	CCNNGG	4 cut(s)	177, 752, 1064, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	993, 1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 322
Bse3DI	GCAATG	4 cut(s)	205, 340, 789, 856
BseBI	CCWGG	2 cut(s)	178, 1065
BseDI	CCNNGG	4 cut(s)	177, 752, 1064, 1137
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	2 cut(s)	108, 322
BseMI	GCAATG	4 cut(s)	205, 340, 789, 856
BseMII	CTCAG	5 cut(s)	50, 214, 366, 647, 759
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	605
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	186, 540
BshNI	GGYRCC	1 cut(s)	772
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	2 cut(s)	770, 793
BslI	CCNNNNNNNGG	2 cut(s)	108, 322
BsmAI	GTCTC	3 cut(s)	81, 365, 636
BsmFI	GGGAC	2 cut(s)	770, 793
BsnI	GGCC	2 cut(s)	186, 540
Bso31I	GGTCTC	2 cut(s)	365, 636
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	222, 555
Bsp143I	GATC	3 cut(s)	45, 1018, 1060
Bsp19I	CCATGG	1 cut(s)	1137
BspANI	GGCC	2 cut(s)	186, 540
BspCNI	CTCAG	5 cut(s)	51, 213, 365, 646, 760
BspHI	TCATGA	2 cut(s)	736, 1015
BspLI	GGNNCC	3 cut(s)	328, 395, 774
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	2 cut(s)	1013, 1055
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	2 cut(s)	365, 636
BsrDI	GCAATG	4 cut(s)	205, 340, 789, 856
BssECI	CCNNGG	4 cut(s)	177, 752, 1064, 1137
BssMI	GATC	3 cut(s)	45, 1018, 1060
BssT1I	CCWWGG	2 cut(s)	752, 1137
Bst2UI	CCWGG	2 cut(s)	178, 1065
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	3 cut(s)	426, 720, 1143
BstBI	TTCGAA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	538
BstDEI	CTNAG	8 cut(s)	59, 200, 294, 352, 483, 633, 675, 768
BstDSI	CCRYGG	1 cut(s)	1137
BstF5I	GGATG	1 cut(s)	187
BstKTI	GATC	3 cut(s)	48, 1021, 1063
BstMAI	GTCTC	3 cut(s)	81, 365, 636
BstMBI	GATC	3 cut(s)	45, 1018, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	2 cut(s)	178, 1065
BstSCI	CCNGG	2 cut(s)	176, 1063
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	605
BstX2I	RGATCY	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1060
BsuRI	GGCC	2 cut(s)	186, 540
BtgI	CCRYGG	1 cut(s)	1137
BtsCI	GGATG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	538
CciI	TCATGA	2 cut(s)	736, 1015
Cfr13I	GGNCC	2 cut(s)	185, 539
Csp6I	GTAC	2 cut(s)	271, 1069
CviAII	CATG	9 cut(s)	7, 21, 608, 737, 781, 888, 1016, 1090, 1138
CviQI	GTAC	2 cut(s)	271, 1069
DdeI	CTNAG	8 cut(s)	59, 200, 294, 352, 483, 633, 675, 768
DpnI	GATC	3 cut(s)	47, 1020, 1062
DpnII	GATC	3 cut(s)	45, 1018, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	628
DseDI	GACNNNNNNGTC	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	426, 720, 1143
EarI	CTCTTC	3 cut(s)	426, 720, 1143
Eco130I	CCWWGG	2 cut(s)	752, 1137
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	2 cut(s)	365, 636
Eco57I	CTGAAG	3 cut(s)	54, 68, 564
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	176, 1063
EcoT14I	CCWWGG	2 cut(s)	752, 1137
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	2 cut(s)	752, 1137
FaeI	CATG	9 cut(s)	10, 24, 611, 740, 784, 891, 1019, 1093, 1141
FaqI	GGGAC	2 cut(s)	770, 793
FatI	CATG	9 cut(s)	6, 20, 607, 736, 780, 887, 1015, 1089, 1137
Fnu4HI	GCNGC	1 cut(s)	594
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	594
FspBI	CTAG	2 cut(s)	954, 1100
GluI	GCNGC	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	186, 540
Hin1II	CATG	9 cut(s)	10, 24, 611, 740, 784, 891, 1019, 1093, 1141
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	3 cut(s)	171, 884, 1133
HphI	GGTGA	3 cut(s)	82, 910, 977
Hpy166II	GTNNAC	3 cut(s)	90, 836, 1071
Hpy188I	TCNGA	7 cut(s)	60, 317, 355, 440, 448, 621, 769
Hpy188III	TCNNGA	4 cut(s)	32, 737, 1016, 1079
Hpy8I	GTNNAC	3 cut(s)	90, 836, 1071
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	9 cut(s)	38, 92, 145, 206, 271, 391, 515, 991, 1022
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	7 cut(s)	333, 508, 593, 794, 820, 849, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	8 cut(s)	59, 200, 294, 352, 483, 633, 675, 768
HpySE526I	ACGT	1 cut(s)	983
Hsp92II	CATG	9 cut(s)	10, 24, 611, 740, 784, 891, 1019, 1093, 1141
Kzo9I	GATC	3 cut(s)	45, 1018, 1060
LmnI	GCTCC	3 cut(s)	198, 622, 1141
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	2 cut(s)	469, 1051
MaeI	CTAG	2 cut(s)	954, 1100
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	2 cut(s)	524, 934
MalI	GATC	3 cut(s)	47, 1020, 1062
MboI	GATC	3 cut(s)	45, 1018, 1060
MboII	GAAGA	6 cut(s)	47, 47, 413, 737, 970, 1160
MflI	RGATCY	1 cut(s)	1060
MhlI	GDGCHC	2 cut(s)	222, 555
MluCI	AATT	8 cut(s)	11, 51, 318, 402, 565, 899, 968, 1050
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	463, 644
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	5 cut(s)	123, 341, 645, 714, 744
MspR9I	CCNGG	2 cut(s)	178, 1065
MvaI	CCWGG	2 cut(s)	178, 1065
MwoI	GCNNNNNNNGC	1 cut(s)	590
NcoI	CCATGG	1 cut(s)	1137
NdeII	GATC	3 cut(s)	45, 1018, 1060
NlaIII	CATG	9 cut(s)	10, 24, 611, 740, 784, 891, 1019, 1093, 1141
NlaIV	GGNNCC	3 cut(s)	328, 395, 774
NmuCI	GTSAC	1 cut(s)	524
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	2 cut(s)	736, 1015
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	171, 1133
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	595
PleI	GAGTC	1 cut(s)	892
PpsI	GAGTC	1 cut(s)	892
PshBI	ATTAAT	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	176, 1063
PspGI	CCWGG	2 cut(s)	176, 1063
PspN4I	GGNNCC	3 cut(s)	328, 395, 774
PspPI	GGNCC	2 cut(s)	185, 539
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	1060
RsaI	GTAC	2 cut(s)	272, 1070
RsaNI	GTAC	2 cut(s)	271, 1069
SaqAI	TTAA	5 cut(s)	123, 341, 645, 714, 744
SatI	GCNGC	1 cut(s)	594
Sau3AI	GATC	3 cut(s)	45, 1018, 1060
Sau96I	GGNCC	2 cut(s)	185, 539
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	2 cut(s)	178, 1065
SduI	GDGCHC	2 cut(s)	222, 555
SfaNI	GCATC	2 cut(s)	469, 1051
SfcI	CTRYAG	1 cut(s)	591
SfuI	TTCGAA	1 cut(s)	406
Sse9I	AATT	8 cut(s)	11, 51, 318, 402, 565, 899, 968, 1050
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	2 cut(s)	954, 1100
StyD4I	CCNGG	2 cut(s)	176, 1063
StyI	CCWWGG	2 cut(s)	752, 1137
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	2 cut(s)	48, 406
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	8 cut(s)	11, 51, 318, 402, 565, 899, 968, 1050
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	171, 1133
Tru1I	TTAA	5 cut(s)	123, 341, 645, 714, 744
Tru9I	TTAA	5 cut(s)	123, 341, 645, 714, 744
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	6 cut(s)	127, 534, 652, 725, 1004, 1113
Van91I	CCANNNNNTGG	1 cut(s)	108
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	4 cut(s)	11, 51, 968, 1050
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	2 cut(s)	954, 1100
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.