Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

45196514 .. 45206099

Gene Structure 9586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAATTCTCATCATGCTACCTTCCTGAAGAAATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCACCTCTGTTTCCAAATATTGGAACTCCCTTATTAAACACAATACCTTCGAAAATTCTTCAATACACGGTGGTGGAAGTACACGGAGTTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTACAGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCCTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCGTTCTATGGAACCCCTCAATTCGAAAGTCCATCACTCTTCCTAAACCTCATATCCGACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTAAGAAAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGTTGGCCCTGAAGTTGTGCTCTACTCACTCAACTCAGGGTCTTGGAAAGCCATTACTGCAGCTTCTCCCAAGCATGAGATTGCTCCGACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTATGACAATGTTGTTTTGGGATTTAATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAAGGGACTTGGCTTCTGAGGTGCCAGACATGGAACTCATTGCAGTTAGTGGCAAGTCCCTTGCTCTGCAACACTATGATAGTAAACATAAGTGTTGCAATGTATGGGTTATGAGAGAGTATGGTGTGGTGGAGTCATGGACAAAGCAATTCTCCATTGATTTTCTCACCCCGAACTTTCGGGTAACAAAGGTTTTGGGGTCTAGGAAGAATGGTGAATTTCTTTTGGAAACGTATAAAGCAAAGAAGGGAGAGATAGTCCTTCATGATCCCAAGAAAAACACAAATGAGCATCTTGGAATTTATACAGATCCAGGATCGATATATGTAATATTTTGTATTACTGAAGTAATGTTGAATTATAATTTTTTAAATGTTCATGCTCTTGAAGCATGTTGCTATTACTGTCTTGATATCATTTTTAATGGCTTTTTAACACATTTAAAGGACTTTCGATCAACTACATTTAGTAACATAATTAAATGGAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

393

Amino Acids

45.23

Weight (kDa)

7.23

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	7 - 42	6.9e-07	F-box-like
F-box	PF00646	8 - 43	2.8e-08	F-box domain
FBA_3	PF08268	61 - 325	8.5e-27	F-box associated beta propeller domain
FBA_1	PF07734	67 - 336	7.2e-28	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AasI	GACNNNNNNGTC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	102
AclWI	GGATC	3 cut(s)	950, 992, 1012
AcsI	RAATTY	5 cut(s)	5, 45, 136, 905, 987
AcuI	CTGAAG	4 cut(s)	48, 62, 501, 1053
AfaI	GTAC	2 cut(s)	163, 209
AfiI	CCNNNNNNNGG	2 cut(s)	102, 259
AgsI	TTSAA	4 cut(s)	144, 241, 1045, 1076
AjnI	CCWGG	1 cut(s)	1000
AleI	CACNNNNGTG	1 cut(s)	153
AluBI	AGCT	5 cut(s)	230, 237, 448, 533, 626
AluI	AGCT	5 cut(s)	230, 237, 448, 533, 626
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	3 cut(s)	75, 302, 573
AlwI	GGATC	3 cut(s)	950, 992, 1012
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	445, 530
ApoI	RAATTY	5 cut(s)	5, 45, 136, 905, 987
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	3 cut(s)	76, 847, 914
AsuII	TTCGAA	2 cut(s)	132, 343
BanI	GGYRCC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	457, 542
BccI	CCATC	2 cut(s)	71, 359
BciT130I	CCWGG	1 cut(s)	1002
BcoDI	GTCTC	3 cut(s)	75, 302, 573
BfaI	CTAG	1 cut(s)	891
BfmI	CTRYAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	446, 531
BlsI	GCNGC	2 cut(s)	447, 532
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	1002
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	3 cut(s)	265, 332, 711
BmrFI	CCNGG	1 cut(s)	1002
BmsI	GCATC	2 cut(s)	406, 988
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
Bpu14I	TTCGAA	2 cut(s)	132, 343
Bsa29I	ATCGAT	1 cut(s)	1007
BsaI	GGTCTC	2 cut(s)	302, 573
BsaJI	CCNNGG	1 cut(s)	689
BsaXI	ACNNNNNCTCC	2 cut(s)	930, 960
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 259
Bse3DI	GCAATG	3 cut(s)	277, 726, 793
BseBI	CCWGG	1 cut(s)	1002
BseCI	ATCGAT	1 cut(s)	1007
BseDI	CCNNGG	1 cut(s)	689
BseLI	CCNNNNNNNGG	2 cut(s)	102, 259
BseMI	GCAATG	3 cut(s)	277, 726, 793
BseMII	CTCAG	5 cut(s)	44, 303, 519, 584, 696
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	457, 542
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	709
BshVI	ATCGAT	1 cut(s)	1007
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	707, 730
BslI	CCNNNNNNNGG	2 cut(s)	102, 259
BsmAI	GTCTC	3 cut(s)	75, 302, 573
BsmFI	GGGAC	2 cut(s)	707, 730
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	2 cut(s)	302, 573
Bsp119I	TTCGAA	2 cut(s)	132, 343
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	5 cut(s)	39, 955, 997, 1004, 1142
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	5 cut(s)	45, 302, 518, 583, 697
BspDI	ATCGAT	1 cut(s)	1007
BspHI	TCATGA	2 cut(s)	673, 952
BspLI	GGNNCC	3 cut(s)	265, 332, 711
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	3 cut(s)	950, 992, 1012
BspT104I	TTCGAA	2 cut(s)	132, 343
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	2 cut(s)	302, 573
BsrDI	GCAATG	3 cut(s)	277, 726, 793
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	5 cut(s)	39, 955, 997, 1004, 1142
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	1 cut(s)	1002
Bst4CI	ACNGT	3 cut(s)	152, 397, 1094
Bst6I	CTCTTC	2 cut(s)	363, 657
BstBI	TTCGAA	2 cut(s)	132, 343
BstDEI	CTNAG	8 cut(s)	53, 231, 289, 420, 505, 570, 612, 705
BstKTI	GATC	5 cut(s)	42, 958, 1000, 1007, 1145
BstMAI	GTCTC	3 cut(s)	75, 302, 573
BstMBI	GATC	5 cut(s)	39, 955, 997, 1004, 1142
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 1076
BstNI	CCWGG	1 cut(s)	1002
BstNSI	RCATGY	1 cut(s)	1083
BstSCI	CCNGG	1 cut(s)	1000
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	457, 542
BstX2I	RGATCY	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	997
Bsu15I	ATCGAT	1 cut(s)	1007
BsuRI	GGCC	1 cut(s)	477
BsuTUI	ATCGAT	1 cut(s)	1007
CciI	TCATGA	2 cut(s)	673, 952
Cfr13I	GGNCC	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	1007
Csp6I	GTAC	2 cut(s)	162, 208
CviAII	CATG	8 cut(s)	15, 545, 674, 718, 825, 953, 1067, 1080
CviQI	GTAC	2 cut(s)	162, 208
DdeI	CTNAG	8 cut(s)	53, 231, 289, 420, 505, 570, 612, 705
DpnI	GATC	5 cut(s)	41, 957, 999, 1006, 1144
DpnII	GATC	5 cut(s)	39, 955, 997, 1004, 1142
DraI	TTTAAA	2 cut(s)	1059, 1131
DrdI	GACNNNNNNGTC	1 cut(s)	565
DseDI	GACNNNNNNGTC	1 cut(s)	565
Eam1104I	CTCTTC	2 cut(s)	363, 657
EarI	CTCTTC	2 cut(s)	363, 657
Eco130I	CCWWGG	1 cut(s)	689
Eco31I	GGTCTC	2 cut(s)	302, 573
Eco32I	GATATC	1 cut(s)	1102
Eco57I	CTGAAG	4 cut(s)	48, 62, 501, 1053
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	1000
EcoRV	GATATC	1 cut(s)	1102
EcoT14I	CCWWGG	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	8 cut(s)	18, 548, 677, 721, 828, 956, 1070, 1083
FaqI	GGGAC	2 cut(s)	707, 730
FatI	CATG	8 cut(s)	14, 544, 673, 717, 824, 952, 1066, 1079
Fnu4HI	GCNGC	2 cut(s)	446, 531
Fsp4HI	GCNGC	2 cut(s)	446, 531
FspBI	CTAG	1 cut(s)	891
GluI	GCNGC	2 cut(s)	446, 531
HaeIII	GGCC	1 cut(s)	477
Hin1II	CATG	8 cut(s)	18, 548, 677, 721, 828, 956, 1070, 1083
HindIII	AAGCTT	1 cut(s)	624
HinfI	GANTC	1 cut(s)	821
HphI	GGTGA	3 cut(s)	76, 847, 914
Hpy166II	GTNNAC	3 cut(s)	84, 164, 773
Hpy188I	TCNGA	6 cut(s)	54, 254, 292, 377, 558, 706
Hpy188III	TCNNGA	5 cut(s)	26, 674, 953, 1073, 1097
Hpy8I	GTNNAC	3 cut(s)	84, 164, 773
HpyAV	CCTTC	8 cut(s)	32, 86, 139, 208, 328, 452, 928, 959
HpyCH4III	ACNGT	3 cut(s)	152, 397, 1094
HpyCH4IV	ACGT	1 cut(s)	920
HpyCH4V	TGCA	6 cut(s)	270, 445, 530, 731, 757, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 1076
HpyF3I	CTNAG	8 cut(s)	53, 231, 289, 420, 505, 570, 612, 705
HpySE526I	ACGT	1 cut(s)	920
Hsp92II	CATG	8 cut(s)	18, 548, 677, 721, 828, 956, 1070, 1083
Kzo9I	GATC	5 cut(s)	39, 955, 997, 1004, 1142
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	2 cut(s)	457, 542
LweI	GCATC	2 cut(s)	406, 988
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	1 cut(s)	920
MaeIII	GTNAC	3 cut(s)	461, 871, 1157
MalI	GATC	5 cut(s)	41, 957, 999, 1006, 1144
MboI	GATC	5 cut(s)	39, 955, 997, 1004, 1142
MboII	GAAGA	6 cut(s)	41, 41, 132, 350, 674, 907
MflI	RGATCY	1 cut(s)	997
MhlI	GDGCHC	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	400, 581
MnlI	CCTC	8 cut(s)	48, 97, 293, 296, 346, 378, 658, 700
MroXI	GAANNNNTTC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	1002
MvaI	CCWGG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	2 cut(s)	527, 1076
NdeII	GATC	5 cut(s)	39, 955, 997, 1004, 1142
NlaIII	CATG	8 cut(s)	18, 548, 677, 721, 828, 956, 1070, 1083
NlaIV	GGNNCC	3 cut(s)	265, 332, 711
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	1083
NspV	TTCGAA	2 cut(s)	132, 343
OliI	CACNNNNGTG	1 cut(s)	153
PagI	TCATGA	2 cut(s)	673, 952
PdmI	GAANNNNTTC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	102
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	2 cut(s)	447, 532
PleI	GAGTC	1 cut(s)	829
PpsI	GAGTC	1 cut(s)	829
PshBI	ATTAAT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	1000
PspGI	CCWGG	1 cut(s)	1000
PspN4I	GGNNCC	3 cut(s)	265, 332, 711
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	997
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	2 cut(s)	163, 209
RsaNI	GTAC	2 cut(s)	162, 208
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	2 cut(s)	446, 531
Sau3AI	GATC	5 cut(s)	39, 955, 997, 1004, 1142
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	1 cut(s)	1002
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	406, 988
SfcI	CTRYAG	1 cut(s)	528
SfuI	TTCGAA	2 cut(s)	132, 343
SmiMI	CAYNNNNRTG	1 cut(s)	153
SspI	AATATT	2 cut(s)	101, 1020
SspMI	CTAG	1 cut(s)	891
StyD4I	CCNGG	1 cut(s)	1000
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	152, 397, 1094
TaiI	ACGT	1 cut(s)	923
TaqI	TCGA	5 cut(s)	42, 132, 343, 1007, 1141
TaqII	GACCGA	1 cut(s)	320
TatI	WGTACW	2 cut(s)	161, 207
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	445, 530
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	5 cut(s)	471, 589, 662, 941, 1055
TspGWI	ACGGA	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	5 cut(s)	5, 45, 136, 905, 987
XceI	RCATGY	1 cut(s)	1083
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	891
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.