Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

44116156 .. 44116785

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAATTCTCATCAGACTACCTTACTGAAGAAATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCGCCTCTGTTAGCAAATCTTGGAACAACCTTATTAAACACAATACCTTCATCAAAAACCACCTGAAACTCACTTCAAACAGAATCACCAGAGATGGCCCTCTGCTCCTTCTCAGGCATTGCCCCAGAGAGCCCAATGTAGAGCAGTATTCTCTCCATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCGGCTAAGAGCTTTAATGAGTGTTTCCGAATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCATCCTATGGAACCCCTCAATTCGAAAGTCCTTCACTATTCCTAAACCTCATATCCCACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTAAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAATAGAGCTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAGGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGTATGAGATTGCTCGAACAATGTGGTCACAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

210

Amino Acids

24.47

Weight (kDa)

8.35

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 44	9.7e-09	F-box domain
FBA_1	PF07734	83 - 204	1.7e-14	F-box associated beta propeller domain
FBA_3	PF08268	97 - 201	9.5e-11	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	5, 45
AcuI	CTGAAG	3 cut(s)	48, 62, 558
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	159
AluBI	AGCT	5 cut(s)	294, 505, 530, 547, 590
AluI	AGCT	5 cut(s)	294, 505, 530, 547, 590
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	75, 359
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	502, 587
ApoI	RAATTY	2 cut(s)	5, 45
AseI	ATTAAT	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	160
AsuII	TTCGAA	1 cut(s)	400
AsuNHI	GCTAGC	1 cut(s)	530
BanII	GRGCYC	2 cut(s)	216, 549
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	514, 599
BccI	CCATC	2 cut(s)	71, 170
BcoDI	GTCTC	2 cut(s)	75, 359
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	2 cut(s)	503, 588
BlsI	GCNGC	2 cut(s)	504, 589
BmcAI	AGTACT	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	389
BmsI	GCATC	1 cut(s)	463
BmtI	GCTAGC	1 cut(s)	534
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu14I	TTCGAA	1 cut(s)	400
BsaI	GGTCTC	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	2 cut(s)	199, 334
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	199, 334
BseMII	CTCAG	3 cut(s)	44, 208, 360
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	514, 599
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	75, 359
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	216, 549
Bsp143I	GATC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	45, 207, 359
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	199, 334
BssMI	GATC	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	454
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	5 cut(s)	53, 194, 288, 346, 477
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	2 cut(s)	75, 359
BstMBI	GATC	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	514, 599
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	265
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	53, 194, 288, 346, 477
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	216, 549
Eco31I	GGTCTC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	3 cut(s)	48, 62, 558
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	216, 549
FaiI	YATR	6 cut(s)	385, 429, 450, 459, 513, 603
Fnu4HI	GCNGC	2 cut(s)	503, 588
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	2 cut(s)	216, 549
Fsp4HI	GCNGC	2 cut(s)	503, 588
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	2 cut(s)	503, 588
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	284
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	160
Hpy188I	TCNGA	4 cut(s)	16, 54, 311, 349
HpyAV	CCTTC	7 cut(s)	86, 139, 200, 265, 385, 418, 509
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4V	TGCA	3 cut(s)	327, 502, 587
HpyF3I	CTNAG	5 cut(s)	53, 194, 288, 346, 477
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	9 cut(s)	158, 181, 184, 220, 297, 371, 491, 549, 549
Lsp1109I	GCAGC	2 cut(s)	514, 599
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	518, 624
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	2 cut(s)	41, 41
MhlI	GDGCHC	2 cut(s)	216, 549
MluCI	AATT	5 cut(s)	5, 45, 312, 396, 559
MnlI	CCTC	7 cut(s)	48, 97, 192, 350, 353, 403, 435
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	3 cut(s)	117, 297, 335
MspA1I	CMGCKG	1 cut(s)	505
MspI	CCGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	39
NheI	GCTAGC	1 cut(s)	530
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	2 cut(s)	518, 624
NspV	TTCGAA	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	504, 589
PshBI	ATTAAT	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	589
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	117, 297, 335
SatI	GCNGC	2 cut(s)	503, 588
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	266
SduI	GDGCHC	2 cut(s)	216, 549
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	400
Sse9I	AATT	5 cut(s)	5, 45, 312, 396, 559
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	42, 400, 613
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	5, 45, 312, 396, 559
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	3 cut(s)	117, 297, 335
Tru9I	TTAA	3 cut(s)	117, 297, 335
TseFI	GTSAC	2 cut(s)	518, 624
TseI	GCWGC	2 cut(s)	502, 587
Tsp45I	GTSAC	2 cut(s)	518, 624
TspDTI	ATGAA	3 cut(s)	121, 367, 528
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	2 cut(s)	5, 45
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	531
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.