RLG00000019177

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006943
Physical Location & Seq
Reverse (-)
47802003 .. 47805155
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019177

Sequence Viewer

Length: 1077 bp
ATGCTTCGGAATCAACCGCTTCGTTGCAATCTTCGCAGTTCCTCTTCTCTCCTTCCACTTCATCTCCACCAACAACCCTTGCTGATTGCCATGTACGGCCACCGAATCCCCAAGGACATGACCCAAAAACCTCCAAAAGGATTCAGAGCCTTATTGAGAATGATGATCGCTAGTCTCCAGAAGGATTCAGAGCCTCCAGAAGAAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCGGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCATCCTATGGAACCCCTCAATTCGAAAGTCCTTCACTATTCCTAAACCTCATATCCCACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTAAGAGGGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGCTAGCCCTGAAGTTGAGCTCTACTCACTCAAGTCAGGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGTATGAGATTGCTCGAACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTTTGGCAATGTTGTTTTGGGATTTGATGCGTGTGAAGAGGTTTTTCATGAGATTAAACTGCCAAAGGACCTGGCTTCTGAGGCGCCAAAAATGATCATTTCAGTTATTGGCAAGTCCCTTGCTGTGAAACACTATGATAGTATACATCAGTGTTGCGATGTATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATTTTCTCACCCAGAACTTTCGGGTAACAAGGGTTTTGGGGTCTAGGAAGAATGGTGAGTTTCTTTTAGAAACTTATAATGGAAAGAAGGGAGAGATAGTCCTTCATGATCCGAAGAAAAACACAAATGAGCATCTTGGAATTTATACAGATCCAGGGTACACATGTCTTGAATTTTACAAGGAGAGTCTAGTTTTACTTGATAAAGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

359

Amino Acids

41.09

Weight (kDa)

8.5

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 71 - 328 1.1e-28 F-box associated beta propeller domain
FBA_3 PF08268 78 - 331 3.3e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AccB1I GGYRCC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 787
AciI CCGC 1 cut(s) 17
AclWI GGATC 2 cut(s) 965, 1007
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 2 cut(s) 1002, 1034
AcuI CTGAAG 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 728
AfaI GTAC 3 cut(s) 95, 227, 1022
AfiI CCNNNNNNNGG 2 cut(s) 137, 277
AflIII ACRYGT 1 cut(s) 1025
AgsI TTSAA 2 cut(s) 259, 1034
AjnI CCWGG 2 cut(s) 714, 1015
AluBI AGCT 6 cut(s) 255, 466, 491, 508, 551, 644
AluI AGCT 6 cut(s) 255, 466, 491, 508, 551, 644
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 3 cut(s) 179, 320, 591
AlwI GGATC 2 cut(s) 965, 1007
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 463, 548
ApoI RAATTY 2 cut(s) 1002, 1034
AseI ATTAAT 1 cut(s) 296
AspLEI GCGC 1 cut(s) 730
AspS9I GGNCC 1 cut(s) 712
AsuHPI GGTGA 3 cut(s) 847, 862, 929
AsuII TTCGAA 1 cut(s) 361
AsuNHI GCTAGC 1 cut(s) 491
AvaII GGWCC 1 cut(s) 712
BaeI ACNNNNGTAYC 2 cut(s) 1012, 1045
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 475, 560
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 716, 1017
BclI TGATCA 1 cut(s) 738
BcoDI GTCTC 3 cut(s) 179, 320, 591
BfaI CTAG 4 cut(s) 171, 492, 906, 1052
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 731
BisI GCNGC 2 cut(s) 464, 549
BlsI GCNGC 2 cut(s) 465, 550
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 716, 1017
Bme18I GGWCC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 712
BmiI GGNNCC 2 cut(s) 350, 729
BmrFI CCNGG 2 cut(s) 716, 1017
BmsI GCATC 3 cut(s) 424, 661, 1003
BmtI GCTAGC 1 cut(s) 495
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 2 cut(s) 161, 180
Bpu14I TTCGAA 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 728
BsaI GGTCTC 2 cut(s) 320, 591
BsaJI CCNNGG 2 cut(s) 111, 1016
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 945, 975
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 277
Bse3DI GCAATG 2 cut(s) 295, 658
BseBI CCWGG 2 cut(s) 716, 1017
BseDI CCNNGG 2 cut(s) 111, 1016
BseGI GGATG 2 cut(s) 339, 451
BseLI CCNNNNNNNGG 2 cut(s) 137, 277
BseMI GCAATG 2 cut(s) 295, 658
BseMII CTCAG 3 cut(s) 321, 602, 714
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 475, 560
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 727
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 137, 277
BsmAI GTCTC 3 cut(s) 179, 320, 591
BsmFI GGGAC 1 cut(s) 745
BsnI GGCC 1 cut(s) 99
Bso31I GGTCTC 2 cut(s) 320, 591
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 4 cut(s) 165, 738, 970, 1012
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 3 cut(s) 320, 601, 715
BspHI TCATGA 2 cut(s) 691, 967
BspLI GGNNCC 2 cut(s) 350, 729
BspMAI CTGCAG 1 cut(s) 550
BspOI GCTAGC 1 cut(s) 495
BspPI GGATC 2 cut(s) 965, 1007
BspT104I TTCGAA 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 727
BspTNI GGTCTC 2 cut(s) 320, 591
BsrDI GCAATG 2 cut(s) 295, 658
BssECI CCNNGG 2 cut(s) 111, 1016
BssMI GATC 4 cut(s) 165, 738, 970, 1012
BssNAI GTATAC 1 cut(s) 788
BssNI GRCGYC 1 cut(s) 728
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 788
Bst2UI CCWGG 2 cut(s) 716, 1017
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 49, 675
BstACI GRCGYC 1 cut(s) 728
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 493
BstDEI CTNAG 6 cut(s) 249, 307, 438, 588, 630, 723
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 339, 451
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 1 cut(s) 730
BstKTI GATC 4 cut(s) 168, 741, 973, 1015
BstMAI GTCTC 3 cut(s) 179, 320, 591
BstMBI GATC 4 cut(s) 165, 738, 970, 1012
BstMWI GCNNNNNNNGC 2 cut(s) 33, 725
BstNI CCWGG 2 cut(s) 716, 1017
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 2 cut(s) 714, 1015
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 2 cut(s) 475, 560
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
BstZ17I GTATAC 1 cut(s) 788
BsuRI GGCC 1 cut(s) 99
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 2 cut(s) 339, 451
BtsIMutI CAGTG 1 cut(s) 800
Cac8I GCNNGC 1 cut(s) 493
CciI TCATGA 2 cut(s) 691, 967
CfoI GCGC 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 712
Csp6I GTAC 3 cut(s) 94, 226, 1021
CviAII CATG 6 cut(s) 91, 118, 692, 840, 968, 1026
CviQI GTAC 3 cut(s) 94, 226, 1021
DdeI CTNAG 6 cut(s) 249, 307, 438, 588, 630, 723
DinI GGCGCC 1 cut(s) 729
DpnI GATC 4 cut(s) 167, 740, 972, 1014
DpnII GATC 4 cut(s) 165, 738, 970, 1012
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 49, 675
EarI CTCTTC 2 cut(s) 49, 675
Ecl136II GAGCTC 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 2 cut(s) 320, 591
Eco47I GGWCC 1 cut(s) 712
Eco53kI GAGCTC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 714, 1015
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 729
EheI GGCGCC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 6 cut(s) 94, 121, 695, 843, 971, 1029
FaqI GGGAC 1 cut(s) 745
FatI CATG 6 cut(s) 90, 117, 691, 839, 967, 1025
FbaI TGATCA 1 cut(s) 738
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 2 cut(s) 464, 549
FokI GGATG 2 cut(s) 326, 458
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 2 cut(s) 464, 549
FspBI CTAG 4 cut(s) 171, 492, 906, 1052
GlaI GCGC 1 cut(s) 729
GluI GCNGC 2 cut(s) 464, 549
GsuI CTGGAG 2 cut(s) 161, 180
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 245
HhaI GCGC 1 cut(s) 730
Hin1I GRCGYC 1 cut(s) 728
Hin1II CATG 6 cut(s) 94, 121, 695, 843, 971, 1029
Hin6I GCGC 1 cut(s) 728
HinP1I GCGC 1 cut(s) 728
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 6 cut(s) 10, 105, 141, 185, 836, 1048
HpaII CCGG 1 cut(s) 245
HphI GGTGA 3 cut(s) 847, 862, 929
Hpy166II GTNNAC 2 cut(s) 788, 1023
Hpy188I TCNGA 7 cut(s) 9, 146, 190, 272, 310, 724, 975
Hpy188III TCNNGA 5 cut(s) 178, 197, 692, 968, 1031
Hpy8I GTNNAC 2 cut(s) 788, 1023
HpyAV CCTTC 8 cut(s) 62, 175, 226, 346, 379, 470, 943, 974
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4V TGCA 4 cut(s) 27, 288, 463, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 725
HpyF3I CTNAG 6 cut(s) 249, 307, 438, 588, 630, 723
Hsp92I GRCGYC 1 cut(s) 728
Hsp92II CATG 6 cut(s) 94, 121, 695, 843, 971, 1029
HspAI GCGC 1 cut(s) 728
KasI GGCGCC 1 cut(s) 727
Ksp22I TGATCA 1 cut(s) 738
Kzo9I GATC 4 cut(s) 165, 738, 970, 1012
Lsp1109I GCAGC 2 cut(s) 475, 560
LweI GCATC 3 cut(s) 424, 661, 1003
MaeI CTAG 4 cut(s) 171, 492, 906, 1052
MaeIII GTNAC 2 cut(s) 479, 886
MalI GATC 4 cut(s) 167, 740, 972, 1014
MboI GATC 4 cut(s) 165, 738, 970, 1012
MboII GAAGA 7 cut(s) 23, 36, 212, 215, 692, 922, 988
MflI RGATCY 1 cut(s) 1012
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 273, 357, 851, 1002, 1034
Mly113I GGCGCC 1 cut(s) 728
MlyI GAGTC 2 cut(s) 845, 1057
MseI TTAA 3 cut(s) 296, 600, 699
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 2 cut(s) 716, 1017
MvaI CCWGG 2 cut(s) 716, 1017
MwoI GCNNNNNNNGC 2 cut(s) 33, 725
NarI GGCGCC 1 cut(s) 728
NdeII GATC 4 cut(s) 165, 738, 970, 1012
NheI GCTAGC 1 cut(s) 491
NlaIII CATG 6 cut(s) 94, 121, 695, 843, 971, 1029
NlaIV GGNNCC 2 cut(s) 350, 729
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 1 cut(s) 1029
NspV TTCGAA 1 cut(s) 361
PagI TCATGA 2 cut(s) 691, 967
PciI ACATGT 1 cut(s) 1025
PfeI GAWTC 4 cut(s) 10, 105, 141, 185
PkrI GCNGC 2 cut(s) 465, 550
PleI GAGTC 2 cut(s) 844, 1056
PluTI GGCGCC 1 cut(s) 731
PpsI GAGTC 2 cut(s) 844, 1056
PpuMI RGGWCCY 1 cut(s) 712
PscI ACATGT 1 cut(s) 1025
PshBI ATTAAT 1 cut(s) 296
PsiI TTATAA 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 712
Psp6I CCWGG 2 cut(s) 714, 1015
PspGI CCWGG 2 cut(s) 714, 1015
PspN4I GGNNCC 2 cut(s) 350, 729
PspPI GGNCC 1 cut(s) 712
PspPPI RGGWCCY 1 cut(s) 712
PstI CTGCAG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 3 cut(s) 95, 227, 1022
RsaNI GTAC 3 cut(s) 94, 226, 1021
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 296, 600, 699
SatI GCNGC 2 cut(s) 464, 549
Sau3AI GATC 4 cut(s) 165, 738, 970, 1012
Sau96I GGNCC 1 cut(s) 712
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 2 cut(s) 845, 1057
ScrFI CCNGG 2 cut(s) 716, 1017
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 3 cut(s) 424, 661, 1003
SfcI CTRYAG 1 cut(s) 546
SfoI GGCGCC 1 cut(s) 729
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 273, 357, 851, 1002, 1034
SsiI CCGC 1 cut(s) 17
SspDI GGCGCC 1 cut(s) 727
SspMI CTAG 4 cut(s) 171, 492, 906, 1052
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 2 cut(s) 714, 1015
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 415
TaqI TCGA 2 cut(s) 361, 574
TaqII GACCGA 1 cut(s) 338
TasI AATT 5 cut(s) 273, 357, 851, 1002, 1034
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 4 cut(s) 10, 105, 141, 185
Tru1I TTAA 3 cut(s) 296, 600, 699
Tru9I TTAA 3 cut(s) 296, 600, 699
TscAI CASTG 1 cut(s) 800
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 2 cut(s) 463, 548
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 6 cut(s) 50, 328, 489, 607, 680, 956
TspRI CASTG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 712
VspI ATTAAT 1 cut(s) 296
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 2 cut(s) 1002, 1034
XceI RCATGY 1 cut(s) 1029
XmiI GTMKAC 1 cut(s) 787
XspI CTAG 4 cut(s) 171, 492, 906, 1052
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.