Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362045.1

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 954

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362045.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

tgccccagagagcccaatgtagagcagtattctctacatttagacaaccacaccttccaagagtactcaaaaccacaacttacagctaagagcttcaatgagtgtttccgaattgtgggttcctgcaatggattaatcctcctctcagacgattacctgaccgagaccaataccttcgttctatggaacccctcaattcgaaagtccatcactcttcctaaacctcatatccgacactctcaatactatacagtttatgggtttgggtttgatgctaagaaagatgattacaagatagtgcagctggtgtatgaaggtcacaacagagctggccctgaagttgtgctctactcactcaattcagggtcttggaaagccattactgcagcttctcccaagcatgagattgctccgacaatgtggtctcaggtttttgttaatgggtttatccatttcatagggtattctaagaaaggagaagcttatgacaatgttgttttgggatttaatgtgtgtgaagaggtttttcatgagattaaaatgccaagggacttggcttctgaggtgccagacatggaactcattgcagttagtggcaagtcccttgctctgcaacactatgatagtaaacataagtgttgcaatgtatgggttatgagagagtatggtgtggtggagtcatggacaaagcaattctccattgattttctcaccccgaactttcgggtaacaaaggttttggggtctaggaagaatggtgaatttcttttagaaacgtataaagcaaagaagggagagatagtccttcatgatcccaagaaaaacacaaatgagcatcttggaatttatacagatccagggtacacaagtcttgaacattacatggaaagtctagttttgcttgataaagcaacttcatttgcagattccatggagcaagaagaggaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

317

Amino Acids

36.35

Weight (kDa)

5.83

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	565
AclWI	GGATC	2 cut(s)	806, 848
AcsI	RAATTY	2 cut(s)	761, 843
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	65, 863
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	97, 875
AjnI	CCWGG	1 cut(s)	856
AluBI	AGCT	6 cut(s)	86, 93, 304, 329, 389, 482
AluI	AGCT	6 cut(s)	86, 93, 304, 329, 389, 482
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	158, 429
AlwI	GGATC	2 cut(s)	806, 848
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	301, 386
ApoI	RAATTY	2 cut(s)	761, 843
AseI	ATTAAT	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	703, 770
AsuII	TTCGAA	1 cut(s)	199
BaeI	ACNNNNGTAYC	2 cut(s)	853, 886
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	313, 398
BccI	CCATC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	158, 429
BfaI	CTAG	2 cut(s)	747, 893
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	302, 387
BlsI	GCNGC	2 cut(s)	303, 388
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	3 cut(s)	121, 188, 567
BmrFI	CCNGG	1 cut(s)	858
BmsI	GCATC	2 cut(s)	262, 844
Bpu14I	TTCGAA	1 cut(s)	199
BsaI	GGTCTC	2 cut(s)	158, 429
BsaJI	CCNNGG	3 cut(s)	545, 857, 930
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	3 cut(s)	133, 582, 649
BseBI	CCWGG	1 cut(s)	858
BseDI	CCNNGG	3 cut(s)	545, 857, 930
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	3 cut(s)	133, 582, 649
BseMII	CTCAG	3 cut(s)	159, 440, 552
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	313, 398
BsgI	GTGCAG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	348
BslFI	GGGAC	2 cut(s)	563, 586
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	158, 429
BsmFI	GGGAC	2 cut(s)	563, 586
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	2 cut(s)	158, 429
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	15, 348
Bsp143I	GATC	2 cut(s)	811, 853
Bsp19I	CCATGG	1 cut(s)	930
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	3 cut(s)	158, 439, 553
BspHI	TCATGA	2 cut(s)	529, 808
BspLI	GGNNCC	3 cut(s)	121, 188, 567
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	2 cut(s)	806, 848
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	2 cut(s)	158, 429
BsrDI	GCAATG	3 cut(s)	133, 582, 649
BssECI	CCNNGG	3 cut(s)	545, 857, 930
BssMI	GATC	2 cut(s)	811, 853
BssT1I	CCWWGG	2 cut(s)	545, 930
Bst2UI	CCWGG	1 cut(s)	858
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	3 cut(s)	219, 513, 936
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	6 cut(s)	87, 145, 276, 426, 468, 561
BstDSI	CCRYGG	1 cut(s)	930
BstKTI	GATC	2 cut(s)	814, 856
BstMAI	GTCTC	2 cut(s)	158, 429
BstMBI	GATC	2 cut(s)	811, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	1 cut(s)	858
BstSCI	CCNGG	1 cut(s)	856
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	313, 398
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	930
Cac8I	GCNNGC	1 cut(s)	331
CciI	TCATGA	2 cut(s)	529, 808
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	64, 862
CviAII	CATG	7 cut(s)	401, 530, 574, 681, 809, 883, 931
CviQI	GTAC	2 cut(s)	64, 862
DdeI	CTNAG	6 cut(s)	87, 145, 276, 426, 468, 561
DpnI	GATC	2 cut(s)	813, 855
DpnII	GATC	2 cut(s)	811, 853
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	219, 513, 936
EarI	CTCTTC	3 cut(s)	219, 513, 936
Eco130I	CCWWGG	2 cut(s)	545, 930
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	2 cut(s)	158, 429
Eco57I	CTGAAG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	545, 930
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	545, 930
FaeI	CATG	7 cut(s)	404, 533, 577, 684, 812, 886, 934
FaqI	GGGAC	2 cut(s)	563, 586
FatI	CATG	7 cut(s)	400, 529, 573, 680, 808, 882, 930
Fnu4HI	GCNGC	2 cut(s)	302, 387
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	302, 387
FspBI	CTAG	2 cut(s)	747, 893
GluI	GCNGC	2 cut(s)	302, 387
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	7 cut(s)	404, 533, 577, 684, 812, 886, 934
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	2 cut(s)	677, 926
HphI	GGTGA	2 cut(s)	703, 770
Hpy166II	GTNNAC	2 cut(s)	629, 864
Hpy188I	TCNGA	5 cut(s)	110, 148, 233, 414, 562
Hpy188III	TCNNGA	3 cut(s)	530, 809, 872
Hpy8I	GTNNAC	2 cut(s)	629, 864
HpyAV	CCTTC	5 cut(s)	64, 184, 308, 784, 815
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	7 cut(s)	126, 301, 386, 587, 613, 642, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	6 cut(s)	87, 145, 276, 426, 468, 561
HpySE526I	ACGT	1 cut(s)	776
Hsp92II	CATG	7 cut(s)	404, 533, 577, 684, 812, 886, 934
Kzo9I	GATC	2 cut(s)	811, 853
LmnI	GCTCC	2 cut(s)	415, 934
Lsp1109I	GCAGC	2 cut(s)	313, 398
LweI	GCATC	2 cut(s)	262, 844
MaeI	CTAG	2 cut(s)	747, 893
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	2 cut(s)	317, 727
MalI	GATC	2 cut(s)	813, 855
MboI	GATC	2 cut(s)	811, 853
MboII	GAAGA	4 cut(s)	206, 530, 763, 953
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	2 cut(s)	15, 348
MluCI	AATT	6 cut(s)	111, 195, 358, 692, 761, 843
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	2 cut(s)	256, 437
MnlI	CCTC	7 cut(s)	149, 152, 202, 234, 514, 556, 937
MseI	TTAA	4 cut(s)	134, 438, 507, 537
MspA1I	CMGCKG	1 cut(s)	304
MspR9I	CCNGG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	858
MwoI	GCNNNNNNNGC	1 cut(s)	383
NcoI	CCATGG	1 cut(s)	930
NdeII	GATC	2 cut(s)	811, 853
NlaIII	CATG	7 cut(s)	404, 533, 577, 684, 812, 886, 934
NlaIV	GGNNCC	3 cut(s)	121, 188, 567
NmuCI	GTSAC	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	199
PagI	TCATGA	2 cut(s)	529, 808
PfeI	GAWTC	1 cut(s)	926
PkrI	GCNGC	2 cut(s)	303, 388
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
PshBI	ATTAAT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	856
PspGI	CCWGG	1 cut(s)	856
PspN4I	GGNNCC	3 cut(s)	121, 188, 567
PspPI	GGNCC	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	853
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	2 cut(s)	65, 863
RsaNI	GTAC	2 cut(s)	64, 862
SaqAI	TTAA	4 cut(s)	134, 438, 507, 537
SatI	GCNGC	2 cut(s)	302, 387
Sau3AI	GATC	2 cut(s)	811, 853
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	1 cut(s)	858
SduI	GDGCHC	2 cut(s)	15, 348
SfaNI	GCATC	2 cut(s)	262, 844
SfcI	CTRYAG	1 cut(s)	384
SfuI	TTCGAA	1 cut(s)	199
Sse9I	AATT	6 cut(s)	111, 195, 358, 692, 761, 843
SspMI	CTAG	2 cut(s)	747, 893
StyD4I	CCNGG	1 cut(s)	856
StyI	CCWWGG	2 cut(s)	545, 930
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	111, 195, 358, 692, 761, 843
TatI	WGTACW	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	926
Tru1I	TTAA	4 cut(s)	134, 438, 507, 537
Tru9I	TTAA	4 cut(s)	134, 438, 507, 537
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	301, 386
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	5 cut(s)	327, 445, 518, 797, 906
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	2 cut(s)	761, 843
XspI	CTAG	2 cut(s)	747, 893
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.