Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

51255760 .. 51256989

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG349000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTGAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGGTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAGGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGTATGAGATTGCTCGAACAATGTGGTCTCGGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTGTAAGAAAGGAGAAGCTTTTCACAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAACTGCCAAAGGACCTGGCTTCTGAGGCGCCAAAAATGGTCATTTCAGTTGTTGGCAAGTTCCTTGCTGTGCAACACTATGATAGTAGATATCAGTGTTGCGATGTATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATATTCTCACCCCGAACTATCGGGTAACAAGGGTTTTGGGGTCTAGCAAGAATGGTGAGTTTCTTTTAGAAATGTATAAAGGAAAGAAGGGAGAGATAGTCCTTCATGATCCGAAGAAAAACACAAATGAGCTTCTTGGAATTTATACAGATCCAGGATGCACATGTCTTGAATATTACATGGAAAGTCTAGTTTTACTTGATAAAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

228

Amino Acids

26.2

Weight (kDa)

5.99

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	5 - 196	7.3e-22	F-box associated beta propeller domain
FBA_3	PF08268	8 - 199	2.4e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	575, 617
AcsI	RAATTY	1 cut(s)	612
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	1 cut(s)	644
AjnI	CCWGG	2 cut(s)	324, 625
AluBI	AGCT	5 cut(s)	76, 118, 161, 254, 604
AluI	AGCT	5 cut(s)	76, 118, 161, 254, 604
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	575, 617
Ama87I	CYCGRG	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	73, 158
ApoI	RAATTY	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	457, 472, 539
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	85, 170
BciT130I	CCWGG	2 cut(s)	326, 627
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	516, 662
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	341
BisI	GCNGC	2 cut(s)	74, 159
BlsI	GCNGC	2 cut(s)	75, 160
Bme1390I	CCNGG	2 cut(s)	326, 627
Bme18I	GGWCC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	2 cut(s)	326, 627
BmsI	GCATC	2 cut(s)	34, 620
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	201
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
BseBI	CCWGG	2 cut(s)	326, 627
BseGI	GGATG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	39, 324
BseXI	GCAGC	2 cut(s)	85, 170
BsgI	GTGCAG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	198
BsmAI	GTCTC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	580, 622
BspCNI	CTCAG	2 cut(s)	40, 325
BspHI	TCATGA	2 cut(s)	301, 577
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	2 cut(s)	575, 617
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	201
BssMI	GATC	2 cut(s)	580, 622
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	2 cut(s)	326, 627
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	48, 333
BstF5I	GGATG	1 cut(s)	635
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	2 cut(s)	583, 625
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	580, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	326, 627
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	324, 625
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	85, 170
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	635
BtsIMutI	CAGTG	1 cut(s)	410
CciI	TCATGA	2 cut(s)	301, 577
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	322
CviAII	CATG	5 cut(s)	302, 450, 578, 636, 652
CviJI	RGCY	7 cut(s)	76, 105, 118, 161, 254, 329, 604
CviKI_1	RGCY	7 cut(s)	76, 105, 118, 161, 254, 329, 604
DdeI	CTNAG	2 cut(s)	48, 333
DinI	GGCGCC	1 cut(s)	339
DpnI	GATC	2 cut(s)	582, 624
DpnII	GATC	2 cut(s)	580, 622
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco31I	GGTCTC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	324, 625
EcoRV	GATATC	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	120
EgeI	GGCGCC	1 cut(s)	339
EheI	GGCGCC	1 cut(s)	339
FaeI	CATG	5 cut(s)	305, 453, 581, 639, 655
FatI	CATG	5 cut(s)	301, 449, 577, 635, 651
Fnu4HI	GCNGC	2 cut(s)	74, 159
FokI	GGATG	1 cut(s)	642
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	2 cut(s)	74, 159
FspBI	CTAG	2 cut(s)	516, 662
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	74, 159
HaeII	RGCGCY	1 cut(s)	341
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	5 cut(s)	305, 453, 581, 639, 655
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	1 cut(s)	446
HphI	GGTGA	3 cut(s)	457, 472, 539
Hpy188I	TCNGA	2 cut(s)	334, 585
Hpy188III	TCNNGA	3 cut(s)	302, 578, 641
HpyAV	CCTTC	3 cut(s)	80, 553, 584
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	73, 158, 382, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	2 cut(s)	48, 333
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	5 cut(s)	305, 453, 581, 639, 655
HspAI	GCGC	1 cut(s)	338
KasI	GGCGCC	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	580, 622
LpnPI	CCDG	7 cut(s)	62, 120, 120, 311, 338, 612, 639
Lsp1109I	GCAGC	2 cut(s)	85, 170
LweI	GCATC	2 cut(s)	34, 620
MaeI	CTAG	2 cut(s)	516, 662
MaeIII	GTNAC	2 cut(s)	89, 496
MalI	GATC	2 cut(s)	582, 624
MboI	GATC	2 cut(s)	580, 622
MboII	GAAGA	2 cut(s)	302, 598
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	3 cut(s)	130, 461, 612
Mly113I	GGCGCC	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	3 cut(s)	92, 286, 328
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	210, 309
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	326, 627
MvaI	CCWGG	2 cut(s)	326, 627
MwoI	GCNNNNNNNGC	1 cut(s)	335
NarI	GGCGCC	1 cut(s)	338
NdeII	GATC	2 cut(s)	580, 622
NlaIII	CATG	5 cut(s)	305, 453, 581, 639, 655
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	639
PagI	TCATGA	2 cut(s)	301, 577
PciI	ACATGT	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	2 cut(s)	75, 160
PleI	GAGTC	1 cut(s)	454
PluTI	GGCGCC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	635
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	2 cut(s)	324, 625
PspGI	CCWGG	2 cut(s)	324, 625
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	210, 309
SatI	GCNGC	2 cut(s)	74, 159
Sau3AI	GATC	2 cut(s)	580, 622
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	326, 627
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	9 cut(s)	78, 91, 103, 120, 163, 256, 297, 327, 606
SfaNI	GCATC	2 cut(s)	34, 620
SfcI	CTRYAG	1 cut(s)	156
SfoI	GGCGCC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	3 cut(s)	130, 461, 612
SspDI	GGCGCC	1 cut(s)	337
SspI	AATATT	1 cut(s)	647
SspMI	CTAG	2 cut(s)	516, 662
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	324, 625
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	130, 461, 612
Tru1I	TTAA	2 cut(s)	210, 309
Tru9I	TTAA	2 cut(s)	210, 309
TscAI	CASTG	1 cut(s)	410
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	2 cut(s)	73, 158
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	99, 217, 290, 566
TspRI	CASTG	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	612
XceI	RCATGY	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	516, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.