Rh2AG349200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006943
Physical Location & Seq
Reverse (-)
51294229 .. 51309491
15263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG349200.1

Sequence Viewer

Length: 801 bp
ATGCCTGTGGGTCAGCCAGAACATGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCCTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCGTTCTATGGAACCCCTCAATTCGAAAGTCCATCACCCTTCCTAAACCTCATATCCGACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTAAGAAAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGCTGGCCCTGAAGTTGTGCTCTACTCACTCAATTCAGGGTCTTGGAAAGCCATTACTGCAGCTTCTCCCAAGCATGAGATTGCTCCGACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTATGACAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAAGGGACTTGGCTTCTGAGGTGCCAGACATGGAACTCATTGCAGTTAGTGTGTTGCATGTGGTGTATCAGGAAGAGATACTGATTGGTTTATGCATTTGTCAGGTTGCAGTCATTTACTTCCATGATGAATTTACTATGTTAAAAGGAGTTGGACTCTTCACAATTATTCTTGGTGTGAGTTTATTCAACTGGTACAAGTATGAAAAACTAAAGAAGGGTCACACAAGTGAAGACGACATGGAGGAATCAGTCGTGATGAATGCTGCAAAATATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

266

Amino Acids

30.2

Weight (kDa)

5.03

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 14 - 167 3.3e-20 F-box associated beta propeller domain
FBA_1 PF07734 17 - 167 4e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 505
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 3 cut(s) 37, 673, 770
AleI CACNNNNGTG 1 cut(s) 711
AluBI AGCT 5 cut(s) 33, 244, 269, 329, 422
AluI AGCT 5 cut(s) 33, 244, 269, 329, 422
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 3 cut(s) 98, 369, 767
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 241, 326, 749
ApoI RAATTY 1 cut(s) 614
AseI ATTAAT 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 142
AsuII TTCGAA 1 cut(s) 139
BanI GGYRCC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 1 cut(s) 288
BbvI GCAGC 3 cut(s) 253, 338, 736
BccI CCATC 2 cut(s) 155, 785
BcoDI GTCTC 3 cut(s) 98, 369, 767
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 3 cut(s) 242, 327, 750
BlsI GCNGC 3 cut(s) 243, 328, 751
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 3 cut(s) 61, 128, 507
BmsI GCATC 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 624, 656
Bpu14I TTCGAA 1 cut(s) 139
BsaI GGTCTC 2 cut(s) 98, 369
BsaJI CCNNGG 1 cut(s) 485
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 680
Bse3DI GCAATG 2 cut(s) 73, 522
BseDI CCNNGG 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 73, 522
BseMII CTCAG 3 cut(s) 99, 380, 492
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 253, 338, 736
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 505
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 3 cut(s) 98, 369, 767
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 2 cut(s) 98, 369
Bsp119I TTCGAA 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 288
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 3 cut(s) 98, 379, 493
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 61, 128, 507
BspMAI CTGCAG 1 cut(s) 328
BspT104I TTCGAA 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 505
BspTNI GGTCTC 2 cut(s) 98, 369
BsrDI GCAATG 2 cut(s) 73, 522
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 4 cut(s) 453, 552, 647, 765
BstBI TTCGAA 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 6 cut(s) 27, 85, 216, 366, 408, 501
BstMAI GTCTC 3 cut(s) 98, 369, 767
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 26, 545
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 3 cut(s) 253, 338, 736
BstV2I GAAGAC 1 cut(s) 723
BsuRI GGCC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 679
CviAII CATG 7 cut(s) 23, 341, 470, 514, 542, 608, 724
CviJI RGCY 9 cut(s) 16, 33, 244, 269, 273, 317, 329, 422, 497
CviKI_1 RGCY 9 cut(s) 16, 33, 244, 269, 273, 317, 329, 422, 497
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 6 cut(s) 27, 85, 216, 366, 408, 501
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
Eam1104I CTCTTC 4 cut(s) 453, 552, 647, 765
EarI CTCTTC 4 cut(s) 453, 552, 647, 765
Eco130I CCWWGG 1 cut(s) 485
Eco31I GGTCTC 2 cut(s) 98, 369
Eco57I CTGAAG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 7 cut(s) 26, 344, 473, 517, 545, 611, 727
FaqI GGGAC 1 cut(s) 503
FatI CATG 7 cut(s) 22, 340, 469, 513, 541, 607, 723
Fnu4HI GCNGC 3 cut(s) 242, 327, 750
Fsp4HI GCNGC 3 cut(s) 242, 327, 750
GluI GCNGC 3 cut(s) 242, 327, 750
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 7 cut(s) 26, 344, 473, 517, 545, 611, 727
HindIII AAGCTT 1 cut(s) 420
HinfI GANTC 2 cut(s) 639, 731
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 5 cut(s) 50, 88, 173, 354, 502
Hpy188III TCNNGA 4 cut(s) 470, 554, 739, 767
HpyAV CCTTC 4 cut(s) 124, 164, 248, 694
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 8 cut(s) 66, 241, 326, 527, 541, 579, 593, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 6 cut(s) 27, 85, 216, 366, 408, 501
Hsp92II CATG 7 cut(s) 26, 344, 473, 517, 545, 611, 727
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 3 cut(s) 253, 338, 736
LweI GCATC 1 cut(s) 202
MaeIII GTNAC 2 cut(s) 257, 704
MboII GAAGA 5 cut(s) 470, 569, 634, 728, 782
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 5 cut(s) 51, 135, 298, 614, 648
MlyI GAGTC 1 cut(s) 633
MmeI TCCRAC 3 cut(s) 196, 377, 616
MnlI CCTC 7 cut(s) 89, 92, 142, 174, 454, 496, 721
Mph1103I ATGCAT 1 cut(s) 581
MseI TTAA 4 cut(s) 74, 378, 477, 626
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 751
MwoI GCNNNNNNNGC 1 cut(s) 323
NlaIII CATG 7 cut(s) 26, 344, 473, 517, 545, 611, 727
NlaIV GGNNCC 3 cut(s) 61, 128, 507
NmuCI GTSAC 2 cut(s) 257, 704
NsiI ATGCAT 1 cut(s) 581
NspI RCATGY 2 cut(s) 26, 545
NspV TTCGAA 1 cut(s) 139
OliI CACNNNNGTG 1 cut(s) 711
PagI TCATGA 1 cut(s) 469
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 1 cut(s) 731
PkrI GCNGC 3 cut(s) 243, 328, 751
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PshBI ATTAAT 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 61, 128, 507
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 4 cut(s) 74, 378, 477, 626
SatI GCNGC 3 cut(s) 242, 327, 750
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 633
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 711
Sse9I AATT 5 cut(s) 51, 135, 298, 614, 648
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 139
TaqII GACCGA 1 cut(s) 116
TasI AATT 5 cut(s) 51, 135, 298, 614, 648
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 4 cut(s) 74, 378, 477, 626
Tru9I TTAA 4 cut(s) 74, 378, 477, 626
TseFI GTSAC 2 cut(s) 257, 704
TseI GCWGC 3 cut(s) 241, 326, 749
Tsp45I GTSAC 2 cut(s) 257, 704
TspDTI ATGAA 6 cut(s) 267, 385, 458, 627, 702, 758
VspI ATTAAT 1 cut(s) 74
XapI RAATTY 1 cut(s) 614
XceI RCATGY 2 cut(s) 26, 545
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.