Rroxscaffold_2G00113120

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
38634750 .. 38638601
3852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113120.1

Sequence Viewer

Length: 1425 bp
ATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCACCTCTGTTAGCAAATCTTGGAACACCCTTATTAAGCACAATACCTTCATCAAAAACCACCTGAAACTCACTTCAAACAGAATCACCAGAGATGGCCCTCTGCTCCTTCTCAGGCATTGCCCCAGAAAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTCGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACGTGACCGAGACCAATAACTTCATTCTATGGAACCCCTCAATTCGAAAGTCCATCACTATTCCTAAACGTCATATCCCACACTCTGAAGACTATACAGTTTATGGGTTCGGGTTTGGGTTTGATGCTGAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGCAAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAGGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGTACGAGATTGCTCGAACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTTTGGCAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAACTGCCAAAGGACCTGGCTTCTGAGGCGCCAAAAATGATCATTTCAGTTATTGGCAAGTCCCTTGCCGTGCAACACTATGATAGTATACATCAGTGTTGCGATGTATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATTTTCTCACCCCGAACTATCGGGTAACAAGGGTTTTGGGGTCTAGCAAGAATGGTGAGTTTCTTTTAGAAACTTATAATGGAAAGAAGGGAGAGATAGTCCTTCATGATCCGAAGAAAAACACAAATGAGCATCTTGGAATTTATACAGATCCAGGATGTGCCCTACAAAGGCTCCCAACTAAGAGTGTTATCATCTGCAAATGTGTATGCAAGACTTGGCATGATCTACTTTCGGAACCTGAGTTTGCTAAGCTTCATTTTGCACAAGCAGAGGCCTATCCATTGGTCTGGCCCTGGCATCCAAATCGTGTGTCAAGAACCCTTTACTTGCTTGAGCCTGAAGATAACTCGGTTTTTGATTTGAAGGACTGCGAGTGCAACAACAGAAAATTGAAGTGTATCTGGTGTCGTGTCCACATAAATCTTGGAAAATATAAAATTCCACTACTCAATGCTGAAAAGGTAATTGATATTAATCTGGTGCATGGTAGGAATCAAGGCACTGCAAGGAAGAGCTGCATCAAGATTTTGTCAAATGAGCACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

54.59

Weight (kDa)

8.73

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 33 6.5e-06 F-box domain
FBA_1 PF07734 74 - 330 2.9e-28 F-box associated beta propeller domain
FBA_3 PF08268 87 - 335 1e-25 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 739
AccI GTMKAC 1 cut(s) 799
AclWI GGATC 2 cut(s) 977, 1019
AcsI RAATTY 3 cut(s) 12, 1014, 1314
AcuI CTGAAG 4 cut(s) 29, 429, 531, 1236
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 2 cut(s) 233, 575
AfiI CCNNNNNNNGG 1 cut(s) 1044
AgsI TTSAA 4 cut(s) 126, 265, 1240, 1270
AjnI CCWGG 3 cut(s) 726, 1027, 1169
AluBI AGCT 8 cut(s) 254, 261, 478, 520, 563, 656, 1129, 1392
AluI AGCT 8 cut(s) 254, 261, 478, 520, 563, 656, 1129, 1392
Alw21I GWGCWC 2 cut(s) 522, 1419
Alw26I GTCTC 3 cut(s) 42, 326, 603
AlwI GGATC 2 cut(s) 977, 1019
AoxI GGCC 3 cut(s) 145, 1149, 1166
ApeKI GCWGC 3 cut(s) 475, 560, 1392
ApoI RAATTY 3 cut(s) 12, 1014, 1314
ArsI GACNNNNNNTTYG 2 cut(s) 1172, 1204
AseI ATTAAT 2 cut(s) 302, 1350
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 3 cut(s) 146, 724, 1167
AsuHPI GGTGA 5 cut(s) 43, 127, 859, 874, 941
AsuII TTCGAA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 724
BaeGI GKGCMC 1 cut(s) 1039
BanI GGYRCC 1 cut(s) 739
BanII GRGCYC 1 cut(s) 522
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 2 cut(s) 522, 1419
BbvI GCAGC 3 cut(s) 487, 572, 1379
BccI CCATC 3 cut(s) 38, 137, 383
BceAI ACGGC 1 cut(s) 764
BcgI CGANNNNNNTGC 2 cut(s) 1163, 1197
BciT130I CCWGG 3 cut(s) 728, 1029, 1171
BclI TGATCA 1 cut(s) 750
BcoDI GTCTC 3 cut(s) 42, 326, 603
BfaI CTAG 1 cut(s) 918
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 743
BisI GCNGC 3 cut(s) 476, 561, 1393
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 3 cut(s) 477, 562, 1394
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 728, 1029, 1171
Bme18I GGWCC 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 146, 724, 1167
BmiI GGNNCC 4 cut(s) 356, 741, 1049, 1113
BmrFI CCNGG 3 cut(s) 728, 1029, 1171
BmsI GCATC 4 cut(s) 436, 1015, 1183, 1404
BpiI GAAGAC 1 cut(s) 417
BplI GAGNNNNNCTC 2 cut(s) 509, 541
Bpu1102I GCTNAGC 1 cut(s) 1125
Bpu14I TTCGAA 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 1229
BsaAI YACGTR 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 740
BsaI GGTCTC 2 cut(s) 326, 603
BsaJI CCNNGG 1 cut(s) 1169
BsaXI ACNNNNNCTCC 4 cut(s) 957, 987, 1032, 1062
Bsc4I CCNNNNNNNGG 1 cut(s) 1044
Bse3DI GCAATG 3 cut(s) 166, 301, 670
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 3 cut(s) 728, 1029, 1171
BseDI CCNNGG 1 cut(s) 1169
BseGI GGATG 2 cut(s) 1037, 1174
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 1 cut(s) 1044
BseMI GCAATG 3 cut(s) 166, 301, 670
BseMII CTCAG 7 cut(s) 11, 175, 327, 441, 614, 726, 1107
BseRI GAGGAG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 3 cut(s) 487, 572, 1379
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 3 cut(s) 147, 1151, 1168
BshNI GGYRCC 1 cut(s) 739
BsiHKAI GWGCWC 2 cut(s) 522, 1419
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 1 cut(s) 1044
BsmAI GTCTC 3 cut(s) 42, 326, 603
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 3 cut(s) 147, 1151, 1168
Bso31I GGTCTC 2 cut(s) 326, 603
Bsp119I TTCGAA 1 cut(s) 367
Bsp1286I GDGCHC 3 cut(s) 522, 1039, 1419
Bsp143I GATC 5 cut(s) 6, 750, 982, 1024, 1099
Bsp1720I GCTNAGC 1 cut(s) 1125
BspANI GGCC 3 cut(s) 147, 1151, 1168
BspCNI CTCAG 7 cut(s) 12, 174, 326, 442, 613, 727, 1108
BspHI TCATGA 2 cut(s) 703, 979
BspLI GGNNCC 4 cut(s) 356, 741, 1049, 1113
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 2 cut(s) 977, 1019
BspQI GCTCTTC 1 cut(s) 1382
BspT104I TTCGAA 1 cut(s) 367
BspT107I GGYRCC 1 cut(s) 739
BspTNI GGTCTC 2 cut(s) 326, 603
BsrDI GCAATG 3 cut(s) 166, 301, 670
BssECI CCNNGG 1 cut(s) 1169
BssMI GATC 5 cut(s) 6, 750, 982, 1024, 1099
BssNAI GTATAC 1 cut(s) 800
BssNI GRCGYC 1 cut(s) 740
Bst1107I GTATAC 1 cut(s) 800
Bst2UI CCWGG 3 cut(s) 728, 1029, 1171
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 2 cut(s) 687, 1382
BstACI GRCGYC 1 cut(s) 740
BstBAI YACGTR 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 505
BstF5I GGATG 2 cut(s) 1037, 1174
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 5 cut(s) 9, 753, 985, 1027, 1102
BstMAI GTCTC 3 cut(s) 42, 326, 603
BstMBI GATC 5 cut(s) 6, 750, 982, 1024, 1099
BstMWI GCNNNNNNNGC 1 cut(s) 737
BstNI CCWGG 3 cut(s) 728, 1029, 1171
BstSCI CCNGG 3 cut(s) 726, 1027, 1169
BstSFI CTRYAG 1 cut(s) 558
BstSLI GKGCMC 1 cut(s) 1039
BstV1I GCAGC 3 cut(s) 487, 572, 1379
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 1024
BstXI CCANNNNNNTGG 1 cut(s) 1164
BstYI RGATCY 1 cut(s) 1024
BstZ17I GTATAC 1 cut(s) 800
BsuRI GGCC 3 cut(s) 147, 1151, 1168
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 2 cut(s) 1037, 1174
BtsI GCAGTG 1 cut(s) 1377
BtsIMutI CAGTG 2 cut(s) 812, 1377
Cac8I GCNNGC 1 cut(s) 505
CciI TCATGA 2 cut(s) 703, 979
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 3 cut(s) 146, 724, 1167
Csp6I GTAC 2 cut(s) 232, 574
CviAII CATG 5 cut(s) 704, 852, 980, 1097, 1361
CviQI GTAC 2 cut(s) 232, 574
DinI GGCGCC 1 cut(s) 741
DpnI GATC 5 cut(s) 8, 752, 984, 1026, 1101
DpnII GATC 5 cut(s) 6, 750, 982, 1024, 1099
Eam1104I CTCTTC 2 cut(s) 687, 1382
EarI CTCTTC 2 cut(s) 687, 1382
Ecl136II GAGCTC 1 cut(s) 520
Eco147I AGGCCT 1 cut(s) 1151
Eco24I GRGCYC 1 cut(s) 522
Eco31I GGTCTC 2 cut(s) 326, 603
Eco47I GGWCC 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 4 cut(s) 29, 429, 531, 1236
EcoICRI GAGCTC 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 724
EcoRII CCWGG 3 cut(s) 726, 1027, 1169
EcoT38I GRGCYC 1 cut(s) 522
EgeI GGCGCC 1 cut(s) 741
EheI GGCGCC 1 cut(s) 741
FaeI CATG 5 cut(s) 707, 855, 983, 1100, 1364
FaqI GGGAC 1 cut(s) 757
FatI CATG 5 cut(s) 703, 851, 979, 1096, 1360
FbaI TGATCA 1 cut(s) 750
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 3 cut(s) 476, 561, 1393
FokI GGATG 2 cut(s) 1044, 1161
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 476, 561, 1393
FspBI CTAG 1 cut(s) 918
GlaI GCGC 1 cut(s) 741
GluI GCNGC 3 cut(s) 476, 561, 1393
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 3 cut(s) 147, 1151, 1168
HhaI GCGC 1 cut(s) 742
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 5 cut(s) 707, 855, 983, 1100, 1364
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HindIII AAGCTT 2 cut(s) 654, 1127
HinfI GANTC 3 cut(s) 132, 848, 1369
HphI GGTGA 5 cut(s) 43, 127, 859, 874, 941
Hpy166II GTNNAC 3 cut(s) 51, 800, 1291
Hpy188I TCNGA 7 cut(s) 21, 278, 316, 409, 736, 987, 1111
Hpy188III TCNNGA 4 cut(s) 704, 980, 1191, 1399
Hpy8I GTNNAC 3 cut(s) 51, 800, 1291
HpyAV CCTTC 8 cut(s) 53, 106, 167, 232, 482, 955, 986, 1234
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 2 cut(s) 324, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 737
HpySE526I ACGT 2 cut(s) 324, 391
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 5 cut(s) 707, 855, 983, 1100, 1364
HspAI GCGC 1 cut(s) 740
KasI GGCGCC 1 cut(s) 739
Ksp22I TGATCA 1 cut(s) 750
Kzo9I GATC 5 cut(s) 6, 750, 982, 1024, 1099
LguI GCTCTTC 1 cut(s) 1382
LmnI GCTCC 2 cut(s) 159, 1053
Lsp1109I GCAGC 3 cut(s) 487, 572, 1379
LweI GCATC 4 cut(s) 436, 1015, 1183, 1404
MaeI CTAG 1 cut(s) 918
MaeII ACGT 2 cut(s) 324, 391
MaeIII GTNAC 3 cut(s) 325, 491, 898
MalI GATC 5 cut(s) 8, 752, 984, 1026, 1101
MboI GATC 5 cut(s) 6, 750, 982, 1024, 1099
MboII GAAGA 6 cut(s) 8, 422, 704, 1000, 1229, 1399
MflI RGATCY 1 cut(s) 1024
MhlI GDGCHC 3 cut(s) 522, 1039, 1419
MluCI AATT 9 cut(s) 12, 279, 363, 532, 863, 1014, 1265, 1314, 1341
Mly113I GGCGCC 1 cut(s) 740
MlyI GAGTC 1 cut(s) 857
MnlI CCTC 9 cut(s) 15, 64, 159, 317, 320, 370, 688, 730, 1141
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 5 cut(s) 84, 302, 612, 711, 1350
MspA1I CMGCKG 1 cut(s) 478
MspR9I CCNGG 3 cut(s) 728, 1029, 1171
MvaI CCWGG 3 cut(s) 728, 1029, 1171
MwoI GCNNNNNNNGC 1 cut(s) 737
NarI GGCGCC 1 cut(s) 740
NdeII GATC 5 cut(s) 6, 750, 982, 1024, 1099
NlaIII CATG 5 cut(s) 707, 855, 983, 1100, 1364
NlaIV GGNNCC 4 cut(s) 356, 741, 1049, 1113
NmuCI GTSAC 2 cut(s) 325, 491
NspV TTCGAA 1 cut(s) 367
PagI TCATGA 2 cut(s) 703, 979
PceI AGGCCT 1 cut(s) 1151
PciSI GCTCTTC 1 cut(s) 1382
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 132, 1369
PfoI TCCNGGA 1 cut(s) 1027
PkrI GCNGC 3 cut(s) 477, 562, 1394
PleI GAGTC 1 cut(s) 856
PluTI GGCGCC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 856
Ppu21I YACGTR 1 cut(s) 325
PpuMI RGGWCCY 1 cut(s) 724
PshBI ATTAAT 2 cut(s) 302, 1350
PsiI TTATAA 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 522
Psp5II RGGWCCY 1 cut(s) 724
Psp6I CCWGG 3 cut(s) 726, 1027, 1169
PspGI CCWGG 3 cut(s) 726, 1027, 1169
PspN4I GGNNCC 4 cut(s) 356, 741, 1049, 1113
PspPI GGNCC 3 cut(s) 146, 724, 1167
PspPPI RGGWCCY 1 cut(s) 724
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 1 cut(s) 1024
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 2 cut(s) 233, 575
RsaNI GTAC 2 cut(s) 232, 574
SacI GAGCTC 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 1382
SaqAI TTAA 5 cut(s) 84, 302, 612, 711, 1350
SatI GCNGC 3 cut(s) 476, 561, 1393
Sau3AI GATC 5 cut(s) 6, 750, 982, 1024, 1099
Sau96I GGNCC 3 cut(s) 146, 724, 1167
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 857
ScrFI CCNGG 3 cut(s) 728, 1029, 1171
SduI GDGCHC 3 cut(s) 522, 1039, 1419
SfaNI GCATC 4 cut(s) 436, 1015, 1183, 1404
SfcI CTRYAG 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 367
SinI GGWCC 1 cut(s) 724
SmlI CTYRAG 1 cut(s) 1208
SmoI CTYRAG 1 cut(s) 1208
Sse9I AATT 9 cut(s) 12, 279, 363, 532, 863, 1014, 1265, 1314, 1341
SseBI AGGCCT 1 cut(s) 1151
SspDI GGCGCC 1 cut(s) 739
SspMI CTAG 1 cut(s) 918
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 1151
StyD4I CCNGG 3 cut(s) 726, 1027, 1169
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 2 cut(s) 327, 394
TaqI TCGA 3 cut(s) 9, 367, 586
TaqII GACCGA 1 cut(s) 344
TasI AATT 9 cut(s) 12, 279, 363, 532, 863, 1014, 1265, 1314, 1341
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 132, 1369
Tru1I TTAA 5 cut(s) 84, 302, 612, 711, 1350
Tru9I TTAA 5 cut(s) 84, 302, 612, 711, 1350
TscAI CASTG 2 cut(s) 812, 1384
TseFI GTSAC 2 cut(s) 325, 491
TseI GCWGC 3 cut(s) 475, 560, 1392
Tsp45I GTSAC 2 cut(s) 325, 491
TspDTI ATGAA 7 cut(s) 88, 334, 501, 619, 692, 968, 1121
TspRI CASTG 2 cut(s) 812, 1384
VpaK11BI GGWCC 1 cut(s) 724
VspI ATTAAT 2 cut(s) 302, 1350
XapI RAATTY 3 cut(s) 12, 1014, 1314
XcmI CCANNNNNNNNNTGG 1 cut(s) 1298
XmiI GTMKAC 1 cut(s) 799
XmnI GAANNNNTTC 1 cut(s) 15
XspI CTAG 1 cut(s) 918
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.