Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

47411435 .. 47412556

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAAATGGAATTCTCATCATTCTACCTTCCTGAAGAAATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCACCTCTGTTAGCAAATCTTGGAACACCCTTATTAAACACAATACCTTCATCAAAAACCACCTCAAACTCACTTCAAACAGAATCACCAGAGATGGCCCTCTGCTCCTTCTCAGGCATTGCCCCAGAGAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGATAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACGTGACCGAGACCAATAACTTCATTCTATGGAACCCCTCAATTCGAAAGTCCATCACTATTCCTAAACCTCATATCCCACACTCTGAAGACTACACAGTTTATGGGTTTGGGTTTGATGCTGAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGGTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAAGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGCATGAGATTGCTCGGAGTATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGAAGAAGCTTTTCACAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAGAGGACTTGGCTTCTGAGGCGCCAAACATGTTCATTTCAGTCATTGGCAAGTCCCTTTCTGTGCAACACTATGATAGTATACATAACTGTTGGAATATATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATCGATATTCTTACCCCGAACTATCGGGTAACAAGGGTTTTGGGGTCTAGCAAGAATGGTGAGTTTCTTTTAGAAATGTATAAAGGAAAGAAGGGAGAGATAGTCCTTCATGATCCCAAGAAAAACACAAATGAGCTTCTTGGAATTTATACAGATCCAGGATGCACATGTCTTGAATATTACATGGAGAGTCTAGTTTTACTTGATAAAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

373

Amino Acids

43.28

Weight (kDa)

6.11

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 46	7.5e-09	F-box domain
F-box-like	PF12937	10 - 45	8.9e-07	F-box-like
FBA_1	PF07734	84 - 341	1.8e-29	F-box associated beta propeller domain
FBA_3	PF08268	97 - 344	7.4e-26	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	832
AclWI	GGATC	2 cut(s)	1010, 1052
AcsI	RAATTY	3 cut(s)	11, 51, 1047
AcuI	CTGAAG	4 cut(s)	54, 68, 468, 564
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	2 cut(s)	780, 1070
AgsI	TTSAA	4 cut(s)	165, 304, 570, 1079
AjnI	CCWGG	1 cut(s)	1060
AluBI	AGCT	6 cut(s)	300, 511, 553, 596, 689, 1039
AluI	AGCT	6 cut(s)	300, 511, 553, 596, 689, 1039
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	81, 365, 636
AlwI	GGATC	2 cut(s)	1010, 1052
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	508, 593
ApoI	RAATTY	3 cut(s)	11, 51, 1047
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	2 cut(s)	54, 690
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	4 cut(s)	82, 166, 892, 974
AsuII	TTCGAA	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	2 cut(s)	222, 555
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	520, 605
BccI	CCATC	4 cut(s)	77, 176, 422, 911
BciT130I	CCWGG	1 cut(s)	1062
BcoDI	GTCTC	3 cut(s)	81, 365, 636
BfaI	CTAG	2 cut(s)	951, 1097
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	776
BisI	GCNGC	2 cut(s)	509, 594
BlsI	GCNGC	2 cut(s)	510, 595
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	395, 774
BmrFI	CCNGG	1 cut(s)	1062
BmsI	GCATC	2 cut(s)	469, 1055
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
Bpu14I	TTCGAA	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	906
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	773
BsaI	GGTCTC	2 cut(s)	365, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	205, 340
BseBI	CCWGG	1 cut(s)	1062
BseCI	ATCGAT	1 cut(s)	906
BseGI	GGATG	1 cut(s)	1070
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	205, 340
BseMII	CTCAG	6 cut(s)	50, 214, 366, 474, 647, 759
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	520, 605
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	772
BshVI	ATCGAT	1 cut(s)	906
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	81, 365, 636
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	2 cut(s)	365, 636
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	222, 555
Bsp143I	GATC	3 cut(s)	45, 1015, 1057
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	6 cut(s)	51, 213, 365, 475, 646, 760
BspDI	ATCGAT	1 cut(s)	906
BspHI	TCATGA	2 cut(s)	736, 1012
BspLI	GGNNCC	2 cut(s)	395, 774
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	2 cut(s)	1010, 1052
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	2 cut(s)	365, 636
BsrDI	GCAATG	2 cut(s)	205, 340
BssMI	GATC	3 cut(s)	45, 1015, 1057
BssNAI	GTATAC	1 cut(s)	833
BssNI	GRCGYC	1 cut(s)	773
Bst1107I	GTATAC	1 cut(s)	833
Bst2UI	CCWGG	1 cut(s)	1062
Bst4CI	ACNGT	2 cut(s)	460, 842
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	406
BstDEI	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
BstF5I	GGATG	1 cut(s)	1070
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	3 cut(s)	48, 1018, 1060
BstMAI	GTCTC	3 cut(s)	81, 365, 636
BstMBI	GATC	3 cut(s)	45, 1015, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	1062
BstNSI	RCATGY	2 cut(s)	784, 1074
BstSCI	CCNGG	1 cut(s)	1060
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	520, 605
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1057
BstZ17I	GTATAC	1 cut(s)	833
Bsu15I	ATCGAT	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	906
BtsCI	GGATG	1 cut(s)	1070
CciI	TCATGA	2 cut(s)	736, 1012
CfoI	GCGC	1 cut(s)	775
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	906
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	7 cut(s)	608, 737, 781, 885, 1013, 1071, 1087
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
DinI	GGCGCC	1 cut(s)	774
DpnI	GATC	3 cut(s)	47, 1017, 1059
DpnII	GATC	3 cut(s)	45, 1015, 1057
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	222, 555
Eco31I	GGTCTC	2 cut(s)	365, 636
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	4 cut(s)	54, 68, 468, 564
EcoICRI	GAGCTC	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	1060
EcoT38I	GRGCYC	2 cut(s)	222, 555
EgeI	GGCGCC	1 cut(s)	774
EheI	GGCGCC	1 cut(s)	774
FaeI	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	7 cut(s)	607, 736, 780, 884, 1012, 1070, 1086
FblI	GTMKAC	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	509, 594
FokI	GGATG	1 cut(s)	1077
FriOI	GRGCYC	2 cut(s)	222, 555
Fsp4HI	GCNGC	2 cut(s)	509, 594
FspBI	CTAG	2 cut(s)	951, 1097
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	2 cut(s)	509, 594
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	775
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HindIII	AAGCTT	1 cut(s)	687
HinfI	GANTC	3 cut(s)	171, 881, 1093
HphI	GGTGA	4 cut(s)	82, 166, 892, 974
Hpy166II	GTNNAC	2 cut(s)	90, 833
Hpy188I	TCNGA	6 cut(s)	60, 317, 355, 448, 621, 769
Hpy188III	TCNNGA	5 cut(s)	32, 290, 737, 1013, 1076
Hpy8I	GTNNAC	2 cut(s)	90, 833
HpyAV	CCTTC	8 cut(s)	38, 92, 145, 206, 271, 515, 988, 1019
HpyCH4III	ACNGT	2 cut(s)	460, 842
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	5 cut(s)	333, 508, 593, 817, 1068
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
HspAI	GCGC	1 cut(s)	773
KasI	GGCGCC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	45, 1015, 1057
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	2 cut(s)	520, 605
LweI	GCATC	2 cut(s)	469, 1055
MaeI	CTAG	2 cut(s)	951, 1097
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	364, 524, 931
MalI	GATC	3 cut(s)	47, 1017, 1059
MboI	GATC	3 cut(s)	45, 1015, 1057
MboII	GAAGA	5 cut(s)	47, 47, 461, 695, 737
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	222, 555
MluCI	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
Mly113I	GGCGCC	1 cut(s)	773
MlyI	GAGTC	2 cut(s)	890, 1102
MmeI	TCCRAC	1 cut(s)	824
MroXI	GAANNNNTTC	2 cut(s)	54, 690
MseI	TTAA	4 cut(s)	123, 341, 645, 744
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	1062
MvaI	CCWGG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	1 cut(s)	770
NarI	GGCGCC	1 cut(s)	773
NdeII	GATC	3 cut(s)	45, 1015, 1057
NlaIII	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
NlaIV	GGNNCC	2 cut(s)	395, 774
NmuCI	GTSAC	2 cut(s)	364, 524
NspI	RCATGY	2 cut(s)	784, 1074
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	2 cut(s)	736, 1012
PciI	ACATGT	2 cut(s)	780, 1070
PdmI	GAANNNNTTC	2 cut(s)	54, 690
PfeI	GAWTC	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	1060
PkrI	GCNGC	2 cut(s)	510, 595
PleI	GAGTC	2 cut(s)	889, 1101
PluTI	GGCGCC	1 cut(s)	776
PpsI	GAGTC	2 cut(s)	889, 1101
Ppu21I	YACGTR	1 cut(s)	364
PscI	ACATGT	2 cut(s)	780, 1070
PshBI	ATTAAT	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	1060
PspGI	CCWGG	1 cut(s)	1060
PspN4I	GGNNCC	2 cut(s)	395, 774
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	123, 341, 645, 744
SatI	GCNGC	2 cut(s)	509, 594
Sau3AI	GATC	3 cut(s)	45, 1015, 1057
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	890, 1102
ScrFI	CCNGG	1 cut(s)	1062
SduI	GDGCHC	2 cut(s)	222, 555
SfaNI	GCATC	2 cut(s)	469, 1055
SfcI	CTRYAG	1 cut(s)	591
SfoI	GGCGCC	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	406
Sse9I	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
SspDI	GGCGCC	1 cut(s)	772
SspI	AATATT	1 cut(s)	1082
SspMI	CTAG	2 cut(s)	951, 1097
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	1060
TaaI	ACNGT	2 cut(s)	460, 842
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	48, 406, 906
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	4 cut(s)	123, 341, 645, 744
Tru9I	TTAA	4 cut(s)	123, 341, 645, 744
TseFI	GTSAC	2 cut(s)	364, 524
TseI	GCWGC	2 cut(s)	508, 593
Tsp45I	GTSAC	2 cut(s)	364, 524
TspDTI	ATGAA	8 cut(s)	17, 127, 373, 534, 652, 725, 775, 1001
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	3 cut(s)	11, 51, 1047
XceI	RCATGY	2 cut(s)	784, 1074
XmiI	GTMKAC	1 cut(s)	832
XmnI	GAANNNNTTC	2 cut(s)	54, 690
XspI	CTAG	2 cut(s)	951, 1097
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.