Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

47820437 .. 47823213

Gene Structure 2777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTTTCTTGGTAAATTGTGCAAGTTAGCTTCCTCAGCAAGCTCTTTGACCAGTCTCGAGGAATACATCCCCACAAAACCAGTGTCACTTTCTGAGCTTGGTGGAACTTACTGGGATTCCTCTACGAAGAATATGATCAGGCCCCTTTCACTTTCAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCTGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACGTGACCGAGACCAATACCTTCATTCTATGGAACCCCTCAATTCGAAAGTTCATCACTATTCCTAAACCTCATATCCCACACTCTCAATACTATACAGTTTATGGGTTTGGGTTTGATGCTGAAAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGCTACCCCTGAAGTTGAGCTCTACTCACTCAATTCAGGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGTATGAGATTGCTCGAACAATGTGGTCTCCGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTGTAAGAAAGGAGAAGCTTTTCACAATGTTGTTTTGGGATTTGATGTGTGTGAAGACGTTTTTCATGAGATTAAACTGCCAGAGGACCTGGCTTCTGAGGCGCCAAAAATGATCATTTCAGTTGTTGGCAAGTCCCTTGCTGTGCAACACTATGATAGTATACATCAGTGTTGCGATGTATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATATTCTCACCCCGAACTATCGGGTAACAAGGGTTTTGGGGTCTAGGAAGAATGGTGAGTTTCTTTTAGAAATGTATAAAGGAAAGAAGGGAGAGATAGTCCTTCATGATCCGAAGAAAAACACAAATGAGCTTCTTGGAATTTATACAGATCCAGGATGCACATGTCTTGAATATTACATGGAAAGTCTAGTTTTACTTGATAAAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

343

Amino Acids

38.88

Weight (kDa)

5.95

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	64 - 310	1e-27	F-box associated beta propeller domain
FBA_3	PF08268	67 - 313	3.5e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	739
AclWI	GGATC	2 cut(s)	917, 959
AcsI	RAATTY	1 cut(s)	954
AcuI	CTGAAG	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	680
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	977
AgsI	TTSAA	2 cut(s)	211, 986
AjnI	CCWGG	2 cut(s)	666, 967
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	3 cut(s)	59, 272, 543
AlwI	GGATC	2 cut(s)	917, 959
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	415, 500
ApoI	RAATTY	1 cut(s)	954
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AseI	ATTAAT	1 cut(s)	248
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	141, 664
AsuHPI	GGTGA	3 cut(s)	799, 814, 881
AsuII	TTCGAA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	664
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	427, 512
BciT130I	CCWGG	2 cut(s)	668, 969
BclI	TGATCA	2 cut(s)	135, 690
BcoDI	GTCTC	3 cut(s)	59, 272, 543
BfaI	CTAG	2 cut(s)	858, 1004
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	683
BisI	GCNGC	2 cut(s)	416, 501
BlsI	GCNGC	2 cut(s)	417, 502
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	668, 969
Bme18I	GGWCC	1 cut(s)	664
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	141, 664
BmiI	GGNNCC	3 cut(s)	143, 302, 681
BmrFI	CCNGG	2 cut(s)	668, 969
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	376, 962
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	639
BplI	GAGNNNNNCTC	2 cut(s)	449, 481
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	313
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	1 cut(s)	680
BsaI	GGTCTC	2 cut(s)	272, 543
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	51, 80, 116
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	668, 969
BseGI	GGATG	2 cut(s)	66, 977
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	4 cut(s)	48, 84, 273, 666
BseNI	ACTGG	3 cut(s)	51, 80, 116
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	427, 512
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	3 cut(s)	59, 272, 543
BsmFI	GGGAC	1 cut(s)	697
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	2 cut(s)	272, 543
BsoBI	CYCGRG	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	135, 690, 922, 964
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	4 cut(s)	47, 85, 272, 667
BspHI	TCATGA	2 cut(s)	643, 919
BspLI	GGNNCC	3 cut(s)	143, 302, 681
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	917, 959
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	2 cut(s)	272, 543
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	3 cut(s)	51, 80, 116
BssMI	GATC	4 cut(s)	135, 690, 922, 964
BssNAI	GTATAC	1 cut(s)	740
BssNI	GRCGYC	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	668, 969
Bst4CI	ACNGT	1 cut(s)	367
BstACI	GRCGYC	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	5 cut(s)	34, 93, 201, 259, 675
BstF5I	GGATG	2 cut(s)	66, 977
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	4 cut(s)	138, 693, 925, 967
BstMAI	GTCTC	3 cut(s)	59, 272, 543
BstMBI	GATC	4 cut(s)	135, 690, 922, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 677
BstNI	CCWGG	2 cut(s)	668, 969
BstNSI	RCATGY	1 cut(s)	981
BstSCI	CCNGG	2 cut(s)	666, 967
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	2 cut(s)	427, 512
BstV2I	GAAGAC	1 cut(s)	639
BstX2I	RGATCY	1 cut(s)	964
BstYI	RGATCY	1 cut(s)	964
BstZ17I	GTATAC	1 cut(s)	740
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	768
BtsCI	GGATG	2 cut(s)	66, 977
BtsIMutI	CAGTG	2 cut(s)	87, 752
Cac8I	GCNNGC	1 cut(s)	40
CciI	TCATGA	2 cut(s)	643, 919
CfoI	GCGC	1 cut(s)	682
Cfr13I	GGNCC	2 cut(s)	141, 664
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	644, 792, 920, 978, 994
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	5 cut(s)	34, 93, 201, 259, 675
DinI	GGCGCC	1 cut(s)	681
DpnI	GATC	4 cut(s)	137, 692, 924, 966
DpnII	GATC	4 cut(s)	135, 690, 922, 964
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	2 cut(s)	272, 543
Eco47I	GGWCC	1 cut(s)	664
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	460
EcoO109I	RGGNCCY	2 cut(s)	141, 664
EcoRII	CCWGG	2 cut(s)	666, 967
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
FaeI	CATG	5 cut(s)	647, 795, 923, 981, 997
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	5 cut(s)	643, 791, 919, 977, 993
FbaI	TGATCA	2 cut(s)	135, 690
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	416, 501
FokI	GGATG	2 cut(s)	53, 984
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	2 cut(s)	416, 501
FspBI	CTAG	2 cut(s)	858, 1004
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	2 cut(s)	416, 501
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	682
Hin1I	GRCGYC	1 cut(s)	680
Hin1II	CATG	5 cut(s)	647, 795, 923, 981, 997
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	2 cut(s)	116, 788
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	3 cut(s)	799, 814, 881
Hpy166II	GTNNAC	1 cut(s)	740
Hpy188I	TCNGA	6 cut(s)	94, 157, 224, 262, 676, 927
Hpy188III	TCNNGA	4 cut(s)	56, 644, 920, 983
Hpy8I	GTNNAC	1 cut(s)	740
HpyAV	CCTTC	5 cut(s)	178, 298, 422, 895, 926
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	2 cut(s)	270, 636
HpyCH4V	TGCA	6 cut(s)	21, 240, 415, 500, 724, 975
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 677
HpyF3I	CTNAG	5 cut(s)	34, 93, 201, 259, 675
HpySE526I	ACGT	2 cut(s)	270, 636
Hsp92I	GRCGYC	1 cut(s)	680
Hsp92II	CATG	5 cut(s)	647, 795, 923, 981, 997
HspAI	GCGC	1 cut(s)	680
KasI	GGCGCC	1 cut(s)	679
Ksp22I	TGATCA	2 cut(s)	135, 690
Kzo9I	GATC	4 cut(s)	135, 690, 922, 964
Lsp1109I	GCAGC	2 cut(s)	427, 512
LweI	GCATC	2 cut(s)	376, 962
MaeI	CTAG	2 cut(s)	858, 1004
MaeII	ACGT	2 cut(s)	270, 636
MaeIII	GTNAC	4 cut(s)	84, 271, 431, 838
MalI	GATC	4 cut(s)	137, 692, 924, 966
MboI	GATC	4 cut(s)	135, 690, 922, 964
MboII	GAAGA	4 cut(s)	139, 644, 874, 940
MflI	RGATCY	1 cut(s)	964
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	6 cut(s)	14, 225, 309, 472, 803, 954
Mly113I	GGCGCC	1 cut(s)	680
MlyI	GAGTC	1 cut(s)	797
MnlI	CCTC	9 cut(s)	43, 52, 130, 263, 266, 316, 348, 655, 670
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	3 cut(s)	248, 552, 651
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	668, 969
MvaI	CCWGG	2 cut(s)	668, 969
MwoI	GCNNNNNNNGC	2 cut(s)	35, 677
NarI	GGCGCC	1 cut(s)	680
NdeII	GATC	4 cut(s)	135, 690, 922, 964
NlaIII	CATG	5 cut(s)	647, 795, 923, 981, 997
NlaIV	GGNNCC	3 cut(s)	143, 302, 681
NmuCI	GTSAC	3 cut(s)	84, 271, 431
NspI	RCATGY	1 cut(s)	981
NspV	TTCGAA	1 cut(s)	313
PaeR7I	CTCGAG	1 cut(s)	56
PagI	TCATGA	2 cut(s)	643, 919
PciI	ACATGT	1 cut(s)	977
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	967
PkrI	GCNGC	2 cut(s)	417, 502
PleI	GAGTC	1 cut(s)	796
PluTI	GGCGCC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	664
PscI	ACATGT	1 cut(s)	977
PshBI	ATTAAT	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	666, 967
PspGI	CCWGG	2 cut(s)	666, 967
PspN4I	GGNNCC	3 cut(s)	143, 302, 681
PspPI	GGNCC	2 cut(s)	141, 664
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	964
PvuII	CAGCTG	1 cut(s)	418
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	248, 552, 651
SatI	GCNGC	2 cut(s)	416, 501
Sau3AI	GATC	4 cut(s)	135, 690, 922, 964
Sau96I	GGNCC	2 cut(s)	141, 664
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	2 cut(s)	668, 969
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	376, 962
SfcI	CTRYAG	1 cut(s)	498
SfoI	GGCGCC	1 cut(s)	681
Sfr274I	CTCGAG	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	313
SinI	GGWCC	1 cut(s)	664
SlaI	CTCGAG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	14, 225, 309, 472, 803, 954
SspDI	GGCGCC	1 cut(s)	679
SspI	AATATT	1 cut(s)	989
SspMI	CTAG	2 cut(s)	858, 1004
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	666, 967
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	2 cut(s)	273, 639
TaqI	TCGA	3 cut(s)	57, 313, 526
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	6 cut(s)	14, 225, 309, 472, 803, 954
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	248, 552, 651
Tru9I	TTAA	3 cut(s)	248, 552, 651
TscAI	CASTG	2 cut(s)	87, 752
TseFI	GTSAC	3 cut(s)	84, 271, 431
TseI	GCWGC	2 cut(s)	415, 500
Tsp45I	GTSAC	3 cut(s)	84, 271, 431
TspDTI	ATGAA	6 cut(s)	280, 310, 441, 559, 632, 908
TspRI	CASTG	2 cut(s)	87, 752
VpaK11BI	GGWCC	1 cut(s)	664
VspI	ATTAAT	1 cut(s)	248
XapI	RAATTY	1 cut(s)	954
XceI	RCATGY	1 cut(s)	981
XhoI	CTCGAG	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	858, 1004
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.