Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

45182628 .. 45183749

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGAAAATGGAATTCTCATCATACTACCTTCCTGAAGAAATGATGATCGAAATTCTTCTGAGGCTACCCATCAAGTCTCTCCTTCAGTTCACCTCTGTTAGCAAATCTTGGAACACCCTTATTAAACACAATACCTTCATCAAAAACCACCTCAAACTCACTTCAAACAGAATCACCAGAGATGGCCCTCTGCTCCTTCTCAGGCATTGCCCCAGAGAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGATAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCGTGCAATGGATTAATCCTCCTCTCAGACGATTACGTGACCGAGACCAATAACTTCATTCTATGGAACCCCTCAATTCGAAAGTCCATCACTATTCCTAAACCTCATATCCCACACTCTGAAGACTACACAGTTTATGGGTTTGGGTTTGATGCTGAGAGAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGGTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAAGGTCTTGGAAAAGCATTACTGCAGCTTCTCCCAAGCATGAGATTGCTCGGAGTATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTCTAAGAAAGAAGAAGCCTTTCACAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAGAGGACTTGGCTTCTGAGGCGCCAAACATGTTCATTTCAGTCATTGGCAAGTCCCTTTCTGTGCAACACTATGATAGTATACATAACTGTTGGAATATATGGGTTATGAGAGAGTATGGGGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATATTCTCACCCCGAACTATCGGGTAACAAGGGTTTTGGGGTCTAGCAAGAATGGTGAGTTTCTTTTAGAAATGTATAAAGGAAAGAAGGGAGAGATAGTCCTTCATGATCCCAAGAAAAACACAAATGAGCTTCTTGGAATTTATACAGATCCAGGATGCACATGTCTTGAATATTACATGGAGAGTCTAGTTTTACTTGATAAAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

373

Amino Acids

43.3

Weight (kDa)

6.11

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 46	8.4e-09	F-box domain
F-box-like	PF12937	10 - 45	8.5e-07	F-box-like
FBA_1	PF07734	84 - 341	1.8e-29	F-box associated beta propeller domain
FBA_3	PF08268	97 - 344	7.4e-26	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	772
AccI	GTMKAC	1 cut(s)	832
AclWI	GGATC	2 cut(s)	1010, 1052
AcsI	RAATTY	3 cut(s)	11, 51, 1047
AcuI	CTGAAG	4 cut(s)	54, 68, 468, 564
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	2 cut(s)	780, 1070
AgsI	TTSAA	4 cut(s)	165, 304, 570, 1079
AjnI	CCWGG	1 cut(s)	1060
AluBI	AGCT	5 cut(s)	300, 511, 553, 596, 1039
AluI	AGCT	5 cut(s)	300, 511, 553, 596, 1039
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	3 cut(s)	81, 365, 636
AlwI	GGATC	2 cut(s)	1010, 1052
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	508, 593
ApoI	RAATTY	3 cut(s)	11, 51, 1047
AseI	ATTAAT	1 cut(s)	341
Asp700I	GAANNNNTTC	2 cut(s)	54, 690
AspLEI	GCGC	1 cut(s)	775
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	5 cut(s)	82, 166, 892, 907, 974
AsuII	TTCGAA	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	2 cut(s)	222, 555
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	520, 605
BccI	CCATC	3 cut(s)	77, 176, 422
BciT130I	CCWGG	1 cut(s)	1062
BcoDI	GTCTC	3 cut(s)	81, 365, 636
BfaI	CTAG	2 cut(s)	951, 1097
BfmI	CTRYAG	1 cut(s)	591
BfoI	RGCGCY	1 cut(s)	776
BisI	GCNGC	2 cut(s)	509, 594
BlsI	GCNGC	2 cut(s)	510, 595
BmcAI	AGTACT	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	1062
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	395, 774
BmrFI	CCNGG	1 cut(s)	1062
BmsI	GCATC	2 cut(s)	469, 1055
BpiI	GAAGAC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
Bpu14I	TTCGAA	1 cut(s)	406
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	773
BsaI	GGTCTC	2 cut(s)	365, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	205, 340
BseBI	CCWGG	1 cut(s)	1062
BseGI	GGATG	1 cut(s)	1070
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	2 cut(s)	205, 340
BseMII	CTCAG	6 cut(s)	50, 214, 366, 474, 647, 759
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	520, 605
BsgI	GTGCAG	1 cut(s)	527
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	772
BsiHKAI	GWGCWC	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	3 cut(s)	81, 365, 636
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	1 cut(s)	186
Bso31I	GGTCTC	2 cut(s)	365, 636
Bsp119I	TTCGAA	1 cut(s)	406
Bsp1286I	GDGCHC	2 cut(s)	222, 555
Bsp143I	GATC	3 cut(s)	45, 1015, 1057
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	6 cut(s)	51, 213, 365, 475, 646, 760
BspHI	TCATGA	2 cut(s)	736, 1012
BspLI	GGNNCC	2 cut(s)	395, 774
BspMAI	CTGCAG	1 cut(s)	595
BspPI	GGATC	2 cut(s)	1010, 1052
BspT104I	TTCGAA	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	2 cut(s)	365, 636
BsrDI	GCAATG	2 cut(s)	205, 340
BssMI	GATC	3 cut(s)	45, 1015, 1057
BssNAI	GTATAC	1 cut(s)	833
BssNI	GRCGYC	1 cut(s)	773
Bst1107I	GTATAC	1 cut(s)	833
Bst2UI	CCWGG	1 cut(s)	1062
Bst4CI	ACNGT	2 cut(s)	460, 842
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	773
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	406
BstDEI	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
BstF5I	GGATG	1 cut(s)	1070
BstH2I	RGCGCY	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	775
BstKTI	GATC	3 cut(s)	48, 1018, 1060
BstMAI	GTCTC	3 cut(s)	81, 365, 636
BstMBI	GATC	3 cut(s)	45, 1015, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	1062
BstNSI	RCATGY	2 cut(s)	784, 1074
BstSCI	CCNGG	1 cut(s)	1060
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	520, 605
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1057
BstZ17I	GTATAC	1 cut(s)	833
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	1070
CciI	TCATGA	2 cut(s)	736, 1012
CfoI	GCGC	1 cut(s)	775
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	7 cut(s)	608, 737, 781, 885, 1013, 1071, 1087
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
DinI	GGCGCC	1 cut(s)	774
DpnI	GATC	3 cut(s)	47, 1017, 1059
DpnII	GATC	3 cut(s)	45, 1015, 1057
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Ecl136II	GAGCTC	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	222, 555
Eco31I	GGTCTC	2 cut(s)	365, 636
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	4 cut(s)	54, 68, 468, 564
EcoICRI	GAGCTC	1 cut(s)	553
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	1060
EcoT38I	GRGCYC	2 cut(s)	222, 555
EgeI	GGCGCC	1 cut(s)	774
EheI	GGCGCC	1 cut(s)	774
FaeI	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	7 cut(s)	607, 736, 780, 884, 1012, 1070, 1086
FblI	GTMKAC	1 cut(s)	832
Fnu4HI	GCNGC	2 cut(s)	509, 594
FokI	GGATG	1 cut(s)	1077
FriOI	GRGCYC	2 cut(s)	222, 555
Fsp4HI	GCNGC	2 cut(s)	509, 594
FspBI	CTAG	2 cut(s)	951, 1097
GlaI	GCGC	1 cut(s)	774
GluI	GCNGC	2 cut(s)	509, 594
HaeII	RGCGCY	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	775
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
Hin6I	GCGC	1 cut(s)	773
HinP1I	GCGC	1 cut(s)	773
HinfI	GANTC	3 cut(s)	171, 881, 1093
HphI	GGTGA	5 cut(s)	82, 166, 892, 907, 974
Hpy166II	GTNNAC	2 cut(s)	90, 833
Hpy188I	TCNGA	6 cut(s)	60, 317, 355, 448, 621, 769
Hpy188III	TCNNGA	5 cut(s)	32, 290, 737, 1013, 1076
Hpy8I	GTNNAC	2 cut(s)	90, 833
HpyAV	CCTTC	8 cut(s)	38, 92, 145, 206, 271, 515, 988, 1019
HpyCH4III	ACNGT	2 cut(s)	460, 842
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	5 cut(s)	333, 508, 593, 817, 1068
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	7 cut(s)	59, 200, 352, 483, 633, 675, 768
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
HspAI	GCGC	1 cut(s)	773
KasI	GGCGCC	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	45, 1015, 1057
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	2 cut(s)	520, 605
LweI	GCATC	2 cut(s)	469, 1055
MaeI	CTAG	2 cut(s)	951, 1097
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	364, 524, 931
MalI	GATC	3 cut(s)	47, 1017, 1059
MboI	GATC	3 cut(s)	45, 1015, 1057
MboII	GAAGA	5 cut(s)	47, 47, 461, 695, 737
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	222, 555
MluCI	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
Mly113I	GGCGCC	1 cut(s)	773
MlyI	GAGTC	2 cut(s)	890, 1102
MmeI	TCCRAC	1 cut(s)	824
MroXI	GAANNNNTTC	2 cut(s)	54, 690
MseI	TTAA	4 cut(s)	123, 341, 645, 744
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	1062
MvaI	CCWGG	1 cut(s)	1062
MwoI	GCNNNNNNNGC	1 cut(s)	770
NarI	GGCGCC	1 cut(s)	773
NdeII	GATC	3 cut(s)	45, 1015, 1057
NlaIII	CATG	7 cut(s)	611, 740, 784, 888, 1016, 1074, 1090
NlaIV	GGNNCC	2 cut(s)	395, 774
NmuCI	GTSAC	2 cut(s)	364, 524
NspI	RCATGY	2 cut(s)	784, 1074
NspV	TTCGAA	1 cut(s)	406
PagI	TCATGA	2 cut(s)	736, 1012
PciI	ACATGT	2 cut(s)	780, 1070
PdmI	GAANNNNTTC	2 cut(s)	54, 690
PfeI	GAWTC	1 cut(s)	171
PfoI	TCCNGGA	1 cut(s)	1060
PkrI	GCNGC	2 cut(s)	510, 595
PleI	GAGTC	2 cut(s)	889, 1101
PluTI	GGCGCC	1 cut(s)	776
PpsI	GAGTC	2 cut(s)	889, 1101
Ppu21I	YACGTR	1 cut(s)	364
PscI	ACATGT	2 cut(s)	780, 1070
PshBI	ATTAAT	1 cut(s)	341
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	1060
PspGI	CCWGG	1 cut(s)	1060
PspN4I	GGNNCC	2 cut(s)	395, 774
PspPI	GGNCC	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	595
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	4 cut(s)	123, 341, 645, 744
SatI	GCNGC	2 cut(s)	509, 594
Sau3AI	GATC	3 cut(s)	45, 1015, 1057
Sau96I	GGNCC	1 cut(s)	185
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	890, 1102
ScrFI	CCNGG	1 cut(s)	1062
SduI	GDGCHC	2 cut(s)	222, 555
SfaNI	GCATC	2 cut(s)	469, 1055
SfcI	CTRYAG	1 cut(s)	591
SfoI	GGCGCC	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	406
Sse9I	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
SspDI	GGCGCC	1 cut(s)	772
SspI	AATATT	1 cut(s)	1082
SspMI	CTAG	2 cut(s)	951, 1097
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	1060
TaaI	ACNGT	2 cut(s)	460, 842
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	48, 406
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	7 cut(s)	11, 51, 318, 402, 565, 896, 1047
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	4 cut(s)	123, 341, 645, 744
Tru9I	TTAA	4 cut(s)	123, 341, 645, 744
TseFI	GTSAC	2 cut(s)	364, 524
TseI	GCWGC	2 cut(s)	508, 593
Tsp45I	GTSAC	2 cut(s)	364, 524
TspDTI	ATGAA	8 cut(s)	17, 127, 373, 534, 652, 725, 775, 1001
VspI	ATTAAT	1 cut(s)	341
XapI	RAATTY	3 cut(s)	11, 51, 1047
XceI	RCATGY	2 cut(s)	784, 1074
XmiI	GTMKAC	1 cut(s)	832
XmnI	GAANNNNTTC	2 cut(s)	54, 690
XspI	CTAG	2 cut(s)	951, 1097
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.