Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

27546176 .. 27547051

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1227400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTCCTTCCTTAGAACACTCAAAGCCACAGCTTCCAGTTCAGAGCTTGATCGAGTGTTTCCGAATTGTGGGCTCGTGCAACGGATTATTTCTCCTCTCCGATGATTACCATGCAGAAACCAACACCTTGATTCTATGGAACCCCTCAATAAGAAAGTTCGTCTCACTTCCAAAGCCTCATGAACCAACCTCCCCATATTATCCTGTTTATGGGTTCGGTTTTGATTCGAAGAAAAATGATTACAAGGTAGTGAGACTGGTGTATCTCCGCCAAGATGATCAAGGCCAAGCTTGCCCTGAAGTTTCGCTTTATTCACTAAATTCAGGGTCTTGGAAAACCATTTCAGCAACTGCTCCTAATTATGTCATCGCTCAGACATTTTGGTCTCAAGTTTTTATCAAAGGAGCCGTGCATTGGATTGCGTCTCATCGAAAAGAAAATGGACTCCGCAATGTGATTTTGTCATTTGATGTGAGTGGTGAGACTTTTAAAGAGATTCAGTTGCCAGAAGATTTACCACGTCAGTTTTACAATATTTCAGCTGCTGGAAAGTCTATTGCTGTGAAGCACTATGAGGAAAATACACATAGTATTTGGATTATGAGAGAGTATGGGGTGGTGGATTCATGGACAAAGAAATTCTCTATTGATAGAAATGTCACCCCGAATTTCCTAGTTATACAGATTATGGGGTGCAGGAAGAATGGCGAGTTTCTGTTAGAAATGTATGACCATGGAGAGAAGACTGGAAAGTTGGTTTCTCATGATCCTAAGAACAACAGAAATGAATTTCTAGGAATTCATACAGATCCAGGGTATTCATGTATTGAATATTACACGGAGAGCCTAGCTTTACTCGATCGAGCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

292

Amino Acids

33.28

Weight (kDa)

6.55

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	18 - 254	1.6e-30	F-box associated beta propeller domain
FBA_3	PF08268	19 - 262	1.7e-26	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	385
AciI	CCGC	2 cut(s)	271, 451
AclWI	GGATC	2 cut(s)	764, 806
AcsI	RAATTY	5 cut(s)	322, 641, 670, 791, 801
AcuI	CTGAAG	1 cut(s)	321
AfiI	CCNNNNNNNGG	3 cut(s)	70, 212, 417
AgsI	TTSAA	1 cut(s)	833
AjiI	CACGTC	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	5 cut(s)	34, 48, 293, 545, 854
AluI	AGCT	5 cut(s)	34, 48, 293, 545, 854
Alw26I	GTCTC	5 cut(s)	169, 250, 393, 432, 479
AlwI	GGATC	2 cut(s)	764, 806
AlwNI	CAGNNNCTG	2 cut(s)	353, 548
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	5 cut(s)	322, 641, 670, 791, 801
AsuHPI	GGTGA	2 cut(s)	494, 655
AsuII	TTCGAA	1 cut(s)	230
BaeI	ACNNNNGTAYC	2 cut(s)	248, 281
BanII	GRGCYC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	752
BbvI	GCAGC	1 cut(s)	532
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	5 cut(s)	169, 250, 393, 432, 479
BfaI	CTAG	3 cut(s)	677, 797, 851
BisI	GCNGC	1 cut(s)	546
BlsI	GCNGC	1 cut(s)	547
Bme1390I	CCNGG	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	143, 409
BmrFI	CCNGG	1 cut(s)	816
BpiI	GAAGAC	1 cut(s)	752
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	736, 815
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 212, 417
Bse1I	ACTGG	3 cut(s)	38, 264, 754
Bse3DI	GCAATG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	2 cut(s)	736, 815
BseLI	CCNNNNNNNGG	3 cut(s)	70, 212, 417
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	3 cut(s)	38, 264, 754
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	718
Bsh1285I	CGRYCG	1 cut(s)	865
BshFI	GGCC	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	865
BslI	CCNNNNNNNGG	3 cut(s)	70, 212, 417
BsmAI	GTCTC	5 cut(s)	169, 250, 393, 432, 479
BsmBI	CGTCTC	2 cut(s)	169, 432
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	393
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	51, 280, 769, 811, 862
Bsp19I	CCATGG	1 cut(s)	736
BspACI	CCGC	2 cut(s)	271, 451
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	2 cut(s)	181, 766
BspLI	GGNNCC	2 cut(s)	143, 409
BspPI	GGATC	2 cut(s)	764, 806
BspT104I	TTCGAA	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	3 cut(s)	38, 264, 754
BssECI	CCNNGG	2 cut(s)	736, 815
BssMI	GATC	5 cut(s)	51, 280, 769, 811, 862
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	736
Bst2BI	CACGAG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	816
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	13, 375, 774
BstDSI	CCRYGG	1 cut(s)	736
BstKTI	GATC	5 cut(s)	54, 283, 772, 814, 865
BstMAI	GTCTC	5 cut(s)	169, 250, 393, 432, 479
BstMBI	GATC	5 cut(s)	51, 280, 769, 811, 862
BstMCI	CGRYCG	1 cut(s)	865
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	816
BstSCI	CCNGG	1 cut(s)	814
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	736
BtgZI	GCGATG	1 cut(s)	355
BtrI	CACGTC	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	2 cut(s)	353, 548
CciI	TCATGA	2 cut(s)	181, 766
CseI	GACGC	1 cut(s)	414
CviAII	CATG	6 cut(s)	113, 182, 630, 737, 767, 825
DdeI	CTNAG	3 cut(s)	13, 375, 774
DpnI	GATC	5 cut(s)	53, 282, 771, 813, 864
DpnII	GATC	5 cut(s)	51, 280, 769, 811, 862
DraI	TTTAAA	1 cut(s)	493
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	736
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	814
EcoT14I	CCWWGG	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	2 cut(s)	169, 432
FaeI	CATG	6 cut(s)	116, 185, 633, 740, 770, 828
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	6 cut(s)	112, 181, 629, 736, 766, 824
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	546
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	3 cut(s)	677, 797, 851
GluI	GCNGC	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	116, 185, 633, 740, 770, 828
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	6 cut(s)	4, 133, 227, 447, 499, 626
HphI	GGTGA	2 cut(s)	494, 655
Hpy188I	TCNGA	4 cut(s)	45, 65, 103, 378
Hpy188III	TCNNGA	2 cut(s)	182, 767
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	81, 116, 415, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	3 cut(s)	13, 375, 774
HpySE526I	ACGT	1 cut(s)	523
Hsp92II	CATG	6 cut(s)	116, 185, 633, 740, 770, 828
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	5 cut(s)	51, 280, 769, 811, 862
LmnI	GCTCC	2 cut(s)	361, 407
Lsp1109I	GCAGC	1 cut(s)	532
MaeI	CTAG	3 cut(s)	677, 797, 851
MaeII	ACGT	1 cut(s)	523
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	5 cut(s)	53, 282, 771, 813, 864
MboI	GATC	5 cut(s)	51, 280, 769, 811, 862
MboII	GAAGA	4 cut(s)	244, 524, 715, 757
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	7 cut(s)	66, 322, 361, 641, 670, 791, 801
MlyI	GAGTC	1 cut(s)	441
MnlI	CCTC	5 cut(s)	107, 157, 189, 202, 571
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	816
MwoI	GCNNNNNNNGC	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	736
NdeII	GATC	5 cut(s)	51, 280, 769, 811, 862
NlaIII	CATG	6 cut(s)	116, 185, 633, 740, 770, 828
NlaIV	GGNNCC	2 cut(s)	143, 409
NmuCI	GTSAC	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	230
PagI	TCATGA	2 cut(s)	181, 766
PfeI	GAWTC	4 cut(s)	133, 227, 499, 626
PkrI	GCNGC	1 cut(s)	547
Ple19I	CGATCG	1 cut(s)	865
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	814
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	2 cut(s)	143, 409
PstNI	CAGNNNCTG	2 cut(s)	353, 548
PsuI	RGATCY	1 cut(s)	811
PvuI	CGATCG	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	5 cut(s)	51, 280, 769, 811, 862
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	816
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	9 cut(s)	36, 50, 131, 194, 252, 295, 526, 547, 856
SfuI	TTCGAA	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	7 cut(s)	66, 322, 361, 641, 670, 791, 801
SsiI	CCGC	2 cut(s)	271, 451
SspI	AATATT	2 cut(s)	538, 836
SspMI	CTAG	3 cut(s)	677, 797, 851
StyD4I	CCNGG	1 cut(s)	814
StyI	CCWWGG	1 cut(s)	736
TaiI	ACGT	1 cut(s)	526
TaqI	TCGA	5 cut(s)	54, 230, 433, 861, 865
TasI	AATT	7 cut(s)	66, 322, 361, 641, 670, 791, 801
TfiI	GAWTC	4 cut(s)	133, 227, 499, 626
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	5 cut(s)	198, 618, 794, 804, 813
TspGWI	ACGGA	2 cut(s)	99, 857
XapI	RAATTY	5 cut(s)	322, 641, 670, 791, 801
XspI	CTAG	3 cut(s)	677, 797, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.