Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

38595429 .. 38597767

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00113090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAGTATGGAATTCTCACCATTCTGCCAACTTCCTGAAGAAATGACGATGGAAATTCTTCTGAGGCTACCCATCAAGTCTATCCTTCAGTCCACCTCTGTTTGCAAACCTTGGAACTCCCTTATTAAATGCAATACCTTCATCAAAAAGCACCTCAAACTCACTTCAAACAGAATCACCAGAGATGGCCCTTTGCTCCTTCTCAGGCATTGCCCCAGAGAGCCCAATTTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTCGGTTCCTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCATTCTATGGAACCCCTCAATTCGAAAGTCCATCACTCTTCCTAAACCTCATATCCCACACTCTCAATACCATACAGTTTATGGGTTTGGGTTTGATGCTGAGAGAGATGATTACAAGATAGTGAAGATGGTGTATGAAGGTCACAGCAGAGCTAGCCCTGAAGTTGAGCTCTACTCACTCAATTCAAGGTCTTGGAGAAGCATCACTGCAGCTTCTCCCAAGTATGAGATTGCTCGAACAATGTGGTCTCAGGTTTTTGTTAATGGGTTTATCCATTTCATAGGGTATTGTATGGAAGGAGAAGCTTTTGGCAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAACTGCCAAAGGACCTGGCTTCTGAGGTGCCAAACATGGTCATTTCAGTTATTGGCAAGCCCCTTGCTGTGCAACACTATGATAGTATACATAAGTGTTGCAATGTATGGGTTATGAGAGAGTATGGCGTGGTGGAGTCATGGACAAAGCAATTCACCATTGATTTTCTCACCCAGAACTTTCGGGTAACAAAGGTTTTGGGGTCTAGGAAGAATGGTGAATTTCTTTTAGAAACGTATAAAGCAAAGAAGGGAGAGATAGTCCTTCATGATCCCAAGAAAAACACAAATGAGCATCTTGGAATTTATACAGATCCAGGGTACACAAGTCTTGAATATTACATGGAGAGTCTAGTTTTACTTGATAAAGCAACTTCATTTGCAGATTCCATGGAGCAAGAAGGGGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

386

Amino Acids

44.53

Weight (kDa)

6.18

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 46	4.2e-07	F-box domain
F-box-like	PF12937	8 - 45	1.5e-06	F-box-like
FBA_1	PF07734	89 - 345	1.8e-27	F-box associated beta propeller domain
FBA_3	PF08268	101 - 347	2.3e-28	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	835
AclWI	GGATC	2 cut(s)	1013, 1055
AcsI	RAATTY	4 cut(s)	11, 54, 968, 1050
AcuI	CTGAAG	3 cut(s)	57, 71, 567
AfaI	GTAC	2 cut(s)	275, 1070
AgsI	TTSAA	4 cut(s)	168, 307, 573, 1082
AjnI	CCWGG	2 cut(s)	762, 1063
AluBI	AGCT	6 cut(s)	296, 303, 539, 556, 599, 692
AluI	AGCT	6 cut(s)	296, 303, 539, 556, 599, 692
Alw21I	GWGCWC	1 cut(s)	558
Alw26I	GTCTC	2 cut(s)	368, 639
AlwI	GGATC	2 cut(s)	1013, 1055
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	4 cut(s)	11, 54, 968, 1050
AseI	ATTAAT	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	188, 760
AsuHPI	GGTGA	5 cut(s)	9, 169, 895, 910, 977
AsuII	TTCGAA	1 cut(s)	409
AsuNHI	GCTAGC	1 cut(s)	539
AvaII	GGWCC	1 cut(s)	760
BaeI	ACNNNNGTAYC	2 cut(s)	1060, 1093
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	225, 558
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	5 cut(s)	43, 80, 179, 425, 508
BciT130I	CCWGG	2 cut(s)	764, 1065
BcoDI	GTCTC	2 cut(s)	368, 639
BfaI	CTAG	3 cut(s)	540, 954, 1100
BfmI	CTRYAG	1 cut(s)	594
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	2 cut(s)	764, 1065
Bme18I	GGWCC	1 cut(s)	760
BmgT120I	GGNCC	2 cut(s)	188, 760
BmiI	GGNNCC	3 cut(s)	331, 398, 777
BmrFI	CCNGG	2 cut(s)	764, 1065
BmsI	GCATC	3 cut(s)	472, 597, 1051
BmtI	GCTAGC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	545, 577
Bpu14I	TTCGAA	1 cut(s)	409
BsaI	GGTCTC	2 cut(s)	368, 639
BsaJI	CCNNGG	3 cut(s)	110, 1064, 1137
BsaXI	ACNNNNNCTCC	2 cut(s)	993, 1023
Bse3DI	GCAATG	4 cut(s)	208, 343, 706, 856
BseBI	CCWGG	2 cut(s)	764, 1065
BseDI	CCNNGG	3 cut(s)	110, 1064, 1137
BseMI	GCAATG	4 cut(s)	208, 343, 706, 856
BseMII	CTCAG	6 cut(s)	53, 217, 369, 477, 650, 762
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	608
BshFI	GGCC	1 cut(s)	189
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	368, 639
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	2 cut(s)	368, 639
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	225, 558
Bsp143I	GATC	2 cut(s)	1018, 1060
Bsp19I	CCATGG	1 cut(s)	1137
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	6 cut(s)	54, 216, 368, 478, 649, 763
BspHI	TCATGA	2 cut(s)	739, 1015
BspLI	GGNNCC	3 cut(s)	331, 398, 777
BspMAI	CTGCAG	1 cut(s)	598
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	2 cut(s)	1013, 1055
BspT104I	TTCGAA	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	775
BspTNI	GGTCTC	2 cut(s)	368, 639
BsrDI	GCAATG	4 cut(s)	208, 343, 706, 856
BssECI	CCNNGG	3 cut(s)	110, 1064, 1137
BssMI	GATC	2 cut(s)	1018, 1060
BssNAI	GTATAC	1 cut(s)	836
BssT1I	CCWWGG	2 cut(s)	110, 1137
Bst1107I	GTATAC	1 cut(s)	836
Bst2UI	CCWGG	2 cut(s)	764, 1065
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	429, 723
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	541, 806
BstDEI	CTNAG	7 cut(s)	62, 203, 297, 355, 486, 636, 771
BstDSI	CCRYGG	1 cut(s)	1137
BstKTI	GATC	2 cut(s)	1021, 1063
BstMAI	GTCTC	2 cut(s)	368, 639
BstMBI	GATC	2 cut(s)	1018, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	540
BstNI	CCWGG	2 cut(s)	764, 1065
BstSCI	CCNGG	2 cut(s)	762, 1063
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1060
BstZ17I	GTATAC	1 cut(s)	836
BsuRI	GGCC	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	1137
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	2 cut(s)	541, 806
CciI	TCATGA	2 cut(s)	739, 1015
Cfr13I	GGNCC	2 cut(s)	188, 760
Csp6I	GTAC	2 cut(s)	274, 1069
CviAII	CATG	6 cut(s)	740, 784, 888, 1016, 1090, 1138
CviQI	GTAC	2 cut(s)	274, 1069
DdeI	CTNAG	7 cut(s)	62, 203, 297, 355, 486, 636, 771
DpnI	GATC	2 cut(s)	1020, 1062
DpnII	GATC	2 cut(s)	1018, 1060
Eam1104I	CTCTTC	2 cut(s)	429, 723
EarI	CTCTTC	2 cut(s)	429, 723
Ecl136II	GAGCTC	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	110, 1137
Eco24I	GRGCYC	2 cut(s)	225, 558
Eco31I	GGTCTC	2 cut(s)	368, 639
Eco47I	GGWCC	1 cut(s)	760
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	3 cut(s)	57, 71, 567
EcoICRI	GAGCTC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	760
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	762, 1063
EcoT14I	CCWWGG	2 cut(s)	110, 1137
EcoT38I	GRGCYC	2 cut(s)	225, 558
ErhI	CCWWGG	2 cut(s)	110, 1137
FaeI	CATG	6 cut(s)	743, 787, 891, 1019, 1093, 1141
FatI	CATG	6 cut(s)	739, 783, 887, 1015, 1089, 1137
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	1 cut(s)	597
FriOI	GRGCYC	2 cut(s)	225, 558
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	3 cut(s)	540, 954, 1100
GluI	GCNGC	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	743, 787, 891, 1019, 1093, 1141
HindIII	AAGCTT	1 cut(s)	690
HinfI	GANTC	4 cut(s)	174, 884, 1096, 1133
HphI	GGTGA	5 cut(s)	9, 169, 895, 910, 977
Hpy166II	GTNNAC	3 cut(s)	93, 836, 1071
Hpy188I	TCNGA	4 cut(s)	63, 320, 358, 772
Hpy188III	TCNNGA	4 cut(s)	35, 740, 1016, 1079
Hpy8I	GTNNAC	3 cut(s)	93, 836, 1071
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	7 cut(s)	105, 132, 336, 596, 820, 849, 1130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	540
HpyF3I	CTNAG	7 cut(s)	62, 203, 297, 355, 486, 636, 771
HpySE526I	ACGT	1 cut(s)	983
Hsp92II	CATG	6 cut(s)	743, 787, 891, 1019, 1093, 1141
Kzo9I	GATC	2 cut(s)	1018, 1060
LmnI	GCTCC	2 cut(s)	201, 1141
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	3 cut(s)	472, 597, 1051
MaeI	CTAG	3 cut(s)	540, 954, 1100
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	2 cut(s)	527, 934
MalI	GATC	2 cut(s)	1020, 1062
MboI	GATC	2 cut(s)	1018, 1060
MboII	GAAGA	6 cut(s)	50, 50, 416, 523, 740, 970
MflI	RGATCY	1 cut(s)	1060
MhlI	GDGCHC	2 cut(s)	225, 558
MluCI	AATT	9 cut(s)	11, 54, 226, 321, 405, 568, 899, 968, 1050
MlyI	GAGTC	2 cut(s)	893, 1105
MnlI	CCTC	9 cut(s)	57, 106, 164, 359, 362, 412, 444, 724, 766
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	4 cut(s)	126, 344, 648, 747
MspR9I	CCNGG	2 cut(s)	764, 1065
MvaI	CCWGG	2 cut(s)	764, 1065
MwoI	GCNNNNNNNGC	1 cut(s)	540
NcoI	CCATGG	1 cut(s)	1137
NdeII	GATC	2 cut(s)	1018, 1060
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	6 cut(s)	743, 787, 891, 1019, 1093, 1141
NlaIV	GGNNCC	3 cut(s)	331, 398, 777
NmuCI	GTSAC	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	409
PagI	TCATGA	2 cut(s)	739, 1015
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	174, 1133
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	2 cut(s)	892, 1104
PpsI	GAGTC	2 cut(s)	892, 1104
PpuMI	RGGWCCY	1 cut(s)	760
PshBI	ATTAAT	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	558
Psp5II	RGGWCCY	1 cut(s)	760
Psp6I	CCWGG	2 cut(s)	762, 1063
PspGI	CCWGG	2 cut(s)	762, 1063
PspN4I	GGNNCC	3 cut(s)	331, 398, 777
PspPI	GGNCC	2 cut(s)	188, 760
PspPPI	RGGWCCY	1 cut(s)	760
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	1060
RsaI	GTAC	2 cut(s)	275, 1070
RsaNI	GTAC	2 cut(s)	274, 1069
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	126, 344, 648, 747
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	2 cut(s)	1018, 1060
Sau96I	GGNCC	2 cut(s)	188, 760
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	2 cut(s)	893, 1105
ScrFI	CCNGG	2 cut(s)	764, 1065
SduI	GDGCHC	2 cut(s)	225, 558
SfaNI	GCATC	3 cut(s)	472, 597, 1051
SfcI	CTRYAG	1 cut(s)	594
SfuI	TTCGAA	1 cut(s)	409
SinI	GGWCC	1 cut(s)	760
Sse9I	AATT	9 cut(s)	11, 54, 226, 321, 405, 568, 899, 968, 1050
SspI	AATATT	1 cut(s)	1085
SspMI	CTAG	3 cut(s)	540, 954, 1100
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	2 cut(s)	762, 1063
StyI	CCWWGG	2 cut(s)	110, 1137
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	2 cut(s)	409, 622
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	9 cut(s)	11, 54, 226, 321, 405, 568, 899, 968, 1050
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	174, 1133
Tru1I	TTAA	4 cut(s)	126, 344, 648, 747
Tru9I	TTAA	4 cut(s)	126, 344, 648, 747
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	1 cut(s)	596
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	7 cut(s)	130, 376, 537, 655, 728, 1004, 1113
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	760
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	4 cut(s)	11, 54, 968, 1050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	835
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	3 cut(s)	540, 954, 1100
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.