Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000019.1

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

148913 .. 150028

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000019.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggaattctcatcatactaccttcctgaagaaatgatgatcgaaattcttctgaggctacccatcaagtctctccttcagttcacctctgttagcaaatcttggaacacccttattaaacacaataccttcatcaaaaaccacctcaaactcacttcaaacagaatcaccagagatggccctctgctccttctcaggcattgccccagagagcccaatgtagagcagtattctctacatttagacaaccacaccttccaagagtactcaaaaccacaacttccagataagagcttcaatgagtgtttccgaattgtgggttcgtgcaatggattaatcctcctctcagacgattacgtgaccgagaccaataacttcattctatggaacccctcaattcgaaagtccatcactattcctaaacctcatatcccacactctgaagactacacagtttatgggtttgggtttgatgctgagagagatgattacaagatagtgcagctggtgtatgaaggtcacaacagaggtagccctgaagttgagctctactcactcaattcaaggtcttggaaaagcattactgcagcttctcccaagcatgagattgctcggagtatgtggtctcaggtttttgttaatgggtttatccatttcatagggtattctaagaaagaagaagcttttcacaatgttgttttgggatttgatgtgtgtgaagaggtttttcatgagattaaaatgccagaggacttggcttctgaggcgccaaacatgttcatttcagtcattggcaagtccctttctgtgcaacactatgatagtatacataactgttggaatatatgggttatgagagagtatggggtggtggagtcatggacaaagcaattcaccatcgatattcttaccccgaactatcgggtaacaagggttttggggtctagcaagaatggtgagtttcttttagaaatgtataaaggaaagaagggagagatagtccttcatgatcccaagaaaaacacaaatgagcttcttggaatttatacagatccaggatgcacatgtcttgaatattacatggagagtctagttttacttgataaagcaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

371

Amino Acids

43.04

Weight (kDa)

6.02

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	826
AclWI	GGATC	2 cut(s)	1004, 1046
AcsI	RAATTY	3 cut(s)	5, 45, 1041
AcuI	CTGAAG	4 cut(s)	48, 62, 462, 558
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	2 cut(s)	774, 1064
AgsI	TTSAA	4 cut(s)	159, 298, 564, 1073
AjnI	CCWGG	1 cut(s)	1054
AluBI	AGCT	6 cut(s)	294, 505, 547, 590, 683, 1033
AluI	AGCT	6 cut(s)	294, 505, 547, 590, 683, 1033
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	3 cut(s)	75, 359, 630
AlwI	GGATC	2 cut(s)	1004, 1046
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	502, 587
ApoI	RAATTY	3 cut(s)	5, 45, 1041
AseI	ATTAAT	1 cut(s)	335
Asp700I	GAANNNNTTC	2 cut(s)	48, 684
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	4 cut(s)	76, 160, 886, 968
AsuII	TTCGAA	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	2 cut(s)	216, 549
BbsI	GAAGAC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	2 cut(s)	514, 599
BccI	CCATC	4 cut(s)	71, 170, 416, 905
BciT130I	CCWGG	1 cut(s)	1056
BcoDI	GTCTC	3 cut(s)	75, 359, 630
BfaI	CTAG	2 cut(s)	945, 1091
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	770
BisI	GCNGC	2 cut(s)	503, 588
BlsI	GCNGC	2 cut(s)	504, 589
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	1056
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	389, 768
BmrFI	CCNGG	1 cut(s)	1056
BmsI	GCATC	2 cut(s)	463, 1049
BpiI	GAAGAC	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
Bpu14I	TTCGAA	1 cut(s)	400
Bsa29I	ATCGAT	1 cut(s)	900
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	767
BsaI	GGTCTC	2 cut(s)	359, 630
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	2 cut(s)	199, 334
BseBI	CCWGG	1 cut(s)	1056
BseCI	ATCGAT	1 cut(s)	900
BseGI	GGATG	1 cut(s)	1064
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	2 cut(s)	199, 334
BseMII	CTCAG	6 cut(s)	44, 208, 360, 468, 641, 753
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	514, 599
BsgI	GTGCAG	1 cut(s)	521
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	766
BshVI	ATCGAT	1 cut(s)	900
BsiHKAI	GWGCWC	1 cut(s)	549
BslFI	GGGAC	1 cut(s)	784
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	3 cut(s)	75, 359, 630
BsmFI	GGGAC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	2 cut(s)	359, 630
Bsp119I	TTCGAA	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	216, 549
Bsp143I	GATC	3 cut(s)	39, 1009, 1051
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	6 cut(s)	45, 207, 359, 469, 640, 754
BspDI	ATCGAT	1 cut(s)	900
BspHI	TCATGA	2 cut(s)	730, 1006
BspLI	GGNNCC	2 cut(s)	389, 768
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	2 cut(s)	1004, 1046
BspT104I	TTCGAA	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	766
BspTNI	GGTCTC	2 cut(s)	359, 630
BsrDI	GCAATG	2 cut(s)	199, 334
BssMI	GATC	3 cut(s)	39, 1009, 1051
BssNAI	GTATAC	1 cut(s)	827
BssNI	GRCGYC	1 cut(s)	767
Bst1107I	GTATAC	1 cut(s)	827
Bst2UI	CCWGG	1 cut(s)	1056
Bst4CI	ACNGT	2 cut(s)	454, 836
Bst6I	CTCTTC	1 cut(s)	714
BstACI	GRCGYC	1 cut(s)	767
BstBAI	YACGTR	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	400
BstDEI	CTNAG	7 cut(s)	53, 194, 346, 477, 627, 669, 762
BstF5I	GGATG	1 cut(s)	1064
BstH2I	RGCGCY	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	3 cut(s)	42, 1012, 1054
BstMAI	GTCTC	3 cut(s)	75, 359, 630
BstMBI	GATC	3 cut(s)	39, 1009, 1051
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	1 cut(s)	1056
BstNSI	RCATGY	2 cut(s)	778, 1068
BstSCI	CCNGG	1 cut(s)	1054
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	514, 599
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	1051
BstYI	RGATCY	1 cut(s)	1051
BstZ17I	GTATAC	1 cut(s)	827
Bsu15I	ATCGAT	1 cut(s)	900
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	1 cut(s)	1064
CciI	TCATGA	2 cut(s)	730, 1006
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	900
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	7 cut(s)	602, 731, 775, 879, 1007, 1065, 1081
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	7 cut(s)	53, 194, 346, 477, 627, 669, 762
DinI	GGCGCC	1 cut(s)	768
DpnI	GATC	3 cut(s)	41, 1011, 1053
DpnII	GATC	3 cut(s)	39, 1009, 1051
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	216, 549
Eco31I	GGTCTC	2 cut(s)	359, 630
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	4 cut(s)	48, 62, 462, 558
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	1054
EcoT38I	GRGCYC	2 cut(s)	216, 549
EgeI	GGCGCC	1 cut(s)	768
EheI	GGCGCC	1 cut(s)	768
FaeI	CATG	7 cut(s)	605, 734, 778, 882, 1010, 1068, 1084
FaqI	GGGAC	1 cut(s)	784
FatI	CATG	7 cut(s)	601, 730, 774, 878, 1006, 1064, 1080
FblI	GTMKAC	1 cut(s)	826
Fnu4HI	GCNGC	2 cut(s)	503, 588
FokI	GGATG	1 cut(s)	1071
FriOI	GRGCYC	2 cut(s)	216, 549
Fsp4HI	GCNGC	2 cut(s)	503, 588
FspBI	CTAG	2 cut(s)	945, 1091
GlaI	GCGC	1 cut(s)	768
GluI	GCNGC	2 cut(s)	503, 588
HaeII	RGCGCY	1 cut(s)	770
HaeIII	GGCC	1 cut(s)	180
HhaI	GCGC	1 cut(s)	769
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	7 cut(s)	605, 734, 778, 882, 1010, 1068, 1084
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	3 cut(s)	165, 875, 1087
HphI	GGTGA	4 cut(s)	76, 160, 886, 968
Hpy166II	GTNNAC	2 cut(s)	84, 827
Hpy188I	TCNGA	6 cut(s)	54, 311, 349, 442, 615, 763
Hpy188III	TCNNGA	5 cut(s)	26, 284, 731, 1007, 1070
Hpy8I	GTNNAC	2 cut(s)	84, 827
HpyAV	CCTTC	8 cut(s)	32, 86, 139, 200, 265, 509, 982, 1013
HpyCH4III	ACNGT	2 cut(s)	454, 836
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	5 cut(s)	327, 502, 587, 811, 1062
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	7 cut(s)	53, 194, 346, 477, 627, 669, 762
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	7 cut(s)	605, 734, 778, 882, 1010, 1068, 1084
HspAI	GCGC	1 cut(s)	767
KasI	GGCGCC	1 cut(s)	766
Kzo9I	GATC	3 cut(s)	39, 1009, 1051
LmnI	GCTCC	1 cut(s)	192
Lsp1109I	GCAGC	2 cut(s)	514, 599
LweI	GCATC	2 cut(s)	463, 1049
MaeI	CTAG	2 cut(s)	945, 1091
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	358, 518, 925
MalI	GATC	3 cut(s)	41, 1011, 1053
MboI	GATC	3 cut(s)	39, 1009, 1051
MboII	GAAGA	5 cut(s)	41, 41, 455, 689, 731
MflI	RGATCY	1 cut(s)	1051
MhlI	GDGCHC	2 cut(s)	216, 549
MluCI	AATT	7 cut(s)	5, 45, 312, 396, 559, 890, 1041
Mly113I	GGCGCC	1 cut(s)	767
MlyI	GAGTC	2 cut(s)	884, 1096
MmeI	TCCRAC	1 cut(s)	818
MroXI	GAANNNNTTC	2 cut(s)	48, 684
MseI	TTAA	4 cut(s)	117, 335, 639, 738
MspA1I	CMGCKG	1 cut(s)	505
MspR9I	CCNGG	1 cut(s)	1056
MvaI	CCWGG	1 cut(s)	1056
MwoI	GCNNNNNNNGC	1 cut(s)	764
NarI	GGCGCC	1 cut(s)	767
NdeII	GATC	3 cut(s)	39, 1009, 1051
NlaIII	CATG	7 cut(s)	605, 734, 778, 882, 1010, 1068, 1084
NlaIV	GGNNCC	2 cut(s)	389, 768
NmuCI	GTSAC	2 cut(s)	358, 518
NspI	RCATGY	2 cut(s)	778, 1068
NspV	TTCGAA	1 cut(s)	400
PagI	TCATGA	2 cut(s)	730, 1006
PciI	ACATGT	2 cut(s)	774, 1064
PdmI	GAANNNNTTC	2 cut(s)	48, 684
PfeI	GAWTC	1 cut(s)	165
PfoI	TCCNGGA	1 cut(s)	1054
PkrI	GCNGC	2 cut(s)	504, 589
PleI	GAGTC	2 cut(s)	883, 1095
PluTI	GGCGCC	1 cut(s)	770
PpsI	GAGTC	2 cut(s)	883, 1095
Ppu21I	YACGTR	1 cut(s)	358
PscI	ACATGT	2 cut(s)	774, 1064
PshBI	ATTAAT	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	1054
PspGI	CCWGG	1 cut(s)	1054
PspN4I	GGNNCC	2 cut(s)	389, 768
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	1051
PvuII	CAGCTG	1 cut(s)	505
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	4 cut(s)	117, 335, 639, 738
SatI	GCNGC	2 cut(s)	503, 588
Sau3AI	GATC	3 cut(s)	39, 1009, 1051
Sau96I	GGNCC	1 cut(s)	179
ScaI	AGTACT	1 cut(s)	266
SchI	GAGTC	2 cut(s)	884, 1096
ScrFI	CCNGG	1 cut(s)	1056
SduI	GDGCHC	2 cut(s)	216, 549
SfaNI	GCATC	2 cut(s)	463, 1049
SfcI	CTRYAG	1 cut(s)	585
SfoI	GGCGCC	1 cut(s)	768
SfuI	TTCGAA	1 cut(s)	400
Sse9I	AATT	7 cut(s)	5, 45, 312, 396, 559, 890, 1041
SspDI	GGCGCC	1 cut(s)	766
SspI	AATATT	1 cut(s)	1076
SspMI	CTAG	2 cut(s)	945, 1091
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	1054
TaaI	ACNGT	2 cut(s)	454, 836
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	42, 400, 900
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	7 cut(s)	5, 45, 312, 396, 559, 890, 1041
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	4 cut(s)	117, 335, 639, 738
Tru9I	TTAA	4 cut(s)	117, 335, 639, 738
TseFI	GTSAC	2 cut(s)	358, 518
TseI	GCWGC	2 cut(s)	502, 587
Tsp45I	GTSAC	2 cut(s)	358, 518
TspDTI	ATGAA	7 cut(s)	121, 367, 528, 646, 719, 769, 995
VspI	ATTAAT	1 cut(s)	335
XapI	RAATTY	3 cut(s)	5, 45, 1041
XceI	RCATGY	2 cut(s)	778, 1068
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	2 cut(s)	48, 684
XspI	CTAG	2 cut(s)	945, 1091
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.