Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

9076037 .. 9077171

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G110400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCAGAGTACCTTCCTCCAGAAATCATAACCCAAATTCTTCTTCGGCTACCCATCAAATCTCTTCTTCGGTGCACCTCTATCTGCAAATCTTGGAACTCCCTAATTAAACACACTAGATTCATCAACAACCACCTTAACCTCAATTTAGACAAAACAAGCAATTCCCCTTTGCTCCTTCTCAGGCACTGCCCCAAGGACCCCACTAGAGAGCTCTATTCTCTACACTTAGACAATGGTTCATTCCAAGAACACTCAAAGCCAGAGCTTCCAGTTCAGAGCCTCAATGAGTGTTTCCGAATCGTGGGTTCGTGCAACGGATTGATTCTCCTCTCGGATGATTACCTCACAGATTACAACATGTTTGTTCTATGGAACCCCTCCATTAGAAAGTTCATCACACTTGCCAAGCCTCATGTCCCAAAATCTCCCCATCATTCTGTTTATGGCTTTGGCTTTGATTCTAAGAAAAATGATTACAAGGTAGTAAGACTGGTGTATCTCCACCAAAATGAAGGCCATGCTTGCCCGGAAATCGAGCTTTATTCGCTAAACTCAGGGTCTTGGAAAAGCATTACATCAGCTGCTCCCAGTTATCTGATTGCTCAAAATTTTTGGGGTCAAGTTTTTGTCAATGGGGCTGTCCATTGGGTTGCGTCTTGTAAGAAAGGAAATTGTTTTCGCAATATGGTTTTGTCCTTTGATATGAGTAATGAGACTTTCCAGGAGATTGAGCTGCCAGAAGACTTAGCTTGTGAGTTGCCAACTAAGTACATGGCCATTTCGGCTGCCGGCAAGTCCATTTGTGTAAAGCACTTTGATCAAAATAAACATACTATGTGGGTTTTGAGAGAGTATAGGGTCGTGGAATCTTGGGAAAAGCAAGTCTCTATAGATGTACATGGCACTCCCAATTTCAGAGTCCTGCAGGTTTTAGGCTGTAGGAAGAATAATGGTGAGTTTCTATTAGAAAGGTATGACCATGGAAGAAAGATTGGAGAGTTCGTCTCTCATAATCCCAAGAACAACACAAATGAGTGTCTTGGAATTCACACAGATCCAGGGTATTCGTGTATTGTATATTACACAGAAAGCCTAGTTTTACTCGATAAGACGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

374

Amino Acids

42.78

Weight (kDa)

7.92

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	919
AclWI	GGATC	1 cut(s)	1052
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	3 cut(s)	36, 610, 1047
AfaI	GTAC	3 cut(s)	11, 773, 900
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	360
AjnI	CCWGG	2 cut(s)	723, 1060
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AluBI	AGCT	7 cut(s)	214, 268, 541, 584, 736, 752, 1119
AluI	AGCT	7 cut(s)	214, 268, 541, 584, 736, 752, 1119
Alw21I	GWGCWC	2 cut(s)	77, 216
Alw26I	GTCTC	3 cut(s)	710, 892, 1012
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	1052
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	2 cut(s)	517, 777
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	3 cut(s)	584, 736, 788
ApoI	RAATTY	3 cut(s)	36, 610, 1047
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	482, 515
BalI	TGGCCA	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	77, 216
BbvI	GCAGC	3 cut(s)	571, 723, 775
BccI	CCATC	2 cut(s)	62, 441
BciT130I	CCWGG	2 cut(s)	725, 1062
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	710, 892, 1012
BfaI	CTAG	3 cut(s)	117, 207, 1097
BfmI	CTRYAG	3 cut(s)	891, 926, 940
BfuAI	ACCTGC	1 cut(s)	919
BglI	GCCNNNNNGGC	1 cut(s)	785
BisI	GCNGC	3 cut(s)	585, 737, 789
BlsI	GCNGC	3 cut(s)	586, 738, 790
Bme1390I	CCNGG	3 cut(s)	530, 725, 1062
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	201, 377
BmrFI	CCNGG	3 cut(s)	530, 725, 1062
BmrI	ACTGGG	1 cut(s)	585
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	750
BplI	GAGNNNNNCTC	2 cut(s)	992, 1024
BpuMI	CCSGG	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	195, 982, 1061
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	3 cut(s)	272, 498, 591
BseBI	CCWGG	2 cut(s)	725, 1062
BseDI	CCNNGG	3 cut(s)	195, 982, 1061
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	196, 570
BseNI	ACTGG	3 cut(s)	272, 498, 591
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	571, 723, 775
BshFI	GGCC	2 cut(s)	519, 779
BsiHKAI	GWGCWC	2 cut(s)	77, 216
BsiSI	CCGG	2 cut(s)	530, 792
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	3 cut(s)	710, 892, 1012
BsmBI	CGTCTC	1 cut(s)	1012
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	519, 779
Bsp1286I	GDGCHC	2 cut(s)	77, 216
Bsp1407I	TGTACA	1 cut(s)	898
Bsp143I	GATC	2 cut(s)	820, 1057
Bsp19I	CCATGG	1 cut(s)	982
BspANI	GGCC	2 cut(s)	519, 779
BspCNI	CTCAG	2 cut(s)	195, 569
BspLI	GGNNCC	2 cut(s)	201, 377
BspMAI	CTGCAG	1 cut(s)	930
BspMI	ACCTGC	1 cut(s)	919
BspPI	GGATC	1 cut(s)	1052
BsrFI	RCCGGY	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	898
BsrI	ACTGG	3 cut(s)	272, 498, 591
BssAI	RCCGGY	1 cut(s)	791
BssECI	CCNNGG	3 cut(s)	195, 982, 1061
BssMI	GATC	2 cut(s)	820, 1057
BssT1I	CCWWGG	2 cut(s)	195, 982
Bst2UI	CCWGG	2 cut(s)	725, 1062
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	898
BstC8I	GCNNGC	2 cut(s)	526, 793
BstDEI	CTNAG	6 cut(s)	182, 229, 465, 556, 748, 768
BstDSI	CCRYGG	1 cut(s)	982
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	2 cut(s)	823, 1060
BstMAI	GTCTC	3 cut(s)	710, 892, 1012
BstMBI	GATC	2 cut(s)	820, 1057
BstMWI	GCNNNNNNNGC	3 cut(s)	525, 547, 785
BstNI	CCWGG	2 cut(s)	725, 1062
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	3 cut(s)	528, 723, 1060
BstSFI	CTRYAG	3 cut(s)	891, 926, 940
BstSLI	GKGCMC	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	571, 723, 775
BstV2I	GAAGAC	1 cut(s)	750
BstX2I	RGATCY	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1057
BsuRI	GGCC	2 cut(s)	519, 779
BtgI	CCRYGG	1 cut(s)	982
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	919
Cac8I	GCNNGC	2 cut(s)	526, 793
CaiI	CAGNNNCTG	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	3 cut(s)	10, 772, 899
CviAII	CATG	6 cut(s)	361, 416, 521, 775, 902, 983
CviQI	GTAC	3 cut(s)	10, 772, 899
DdeI	CTNAG	6 cut(s)	182, 229, 465, 556, 748, 768
DpnI	GATC	2 cut(s)	822, 1059
DpnII	GATC	2 cut(s)	820, 1057
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	195, 982
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	723, 1060
EcoT14I	CCWWGG	2 cut(s)	195, 982
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	195, 982
Esp3I	CGTCTC	1 cut(s)	1012
FaeI	CATG	6 cut(s)	364, 419, 524, 778, 905, 986
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	6 cut(s)	360, 415, 520, 774, 901, 982
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	3 cut(s)	585, 737, 789
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	585, 737, 789
FspBI	CTAG	3 cut(s)	117, 207, 1097
GluI	GCNGC	3 cut(s)	585, 737, 789
HaeIII	GGCC	2 cut(s)	519, 779
HapII	CCGG	2 cut(s)	530, 792
HgaI	GACGC	1 cut(s)	645
Hin1II	CATG	6 cut(s)	364, 419, 524, 778, 905, 986
HinfI	GANTC	6 cut(s)	120, 300, 325, 461, 869, 921
HpaII	CCGG	2 cut(s)	530, 792
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	6 cut(s)	7, 279, 299, 337, 600, 920
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	23, 188, 509
HpyCH4V	TGCA	4 cut(s)	75, 87, 315, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	525, 547, 785
HpyF3I	CTNAG	6 cut(s)	182, 229, 465, 556, 748, 768
Hsp92II	CATG	6 cut(s)	364, 419, 524, 778, 905, 986
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	2 cut(s)	820, 1057
LmnI	GCTCC	2 cut(s)	180, 592
Lsp1109I	GCAGC	3 cut(s)	571, 723, 775
MaeI	CTAG	3 cut(s)	117, 207, 1097
MalI	GATC	2 cut(s)	822, 1059
MboI	GATC	2 cut(s)	820, 1057
MboII	GAAGA	7 cut(s)	32, 35, 56, 59, 755, 958, 999
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	2 cut(s)	77, 216
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	8 cut(s)	36, 105, 145, 163, 610, 673, 913, 1047
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	930
MnlI	CCTC	8 cut(s)	27, 88, 152, 293, 341, 356, 391, 423
Mox20I	TGGCCA	1 cut(s)	779
MroNI	GCCGGC	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	2 cut(s)	108, 138
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	2 cut(s)	530, 792
MspR9I	CCNGG	3 cut(s)	530, 725, 1062
MvaI	CCWGG	2 cut(s)	725, 1062
MwoI	GCNNNNNNNGC	3 cut(s)	525, 547, 785
NaeI	GCCGGC	1 cut(s)	793
NciI	CCSGG	1 cut(s)	530
NcoI	CCATGG	1 cut(s)	982
NdeII	GATC	2 cut(s)	820, 1057
NgoMIV	GCCGGC	1 cut(s)	791
NlaIII	CATG	6 cut(s)	364, 419, 524, 778, 905, 986
NlaIV	GGNNCC	2 cut(s)	201, 377
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	793
PfeI	GAWTC	5 cut(s)	120, 300, 325, 461, 869
PfoI	TCCNGGA	1 cut(s)	723
PkrI	GCNGC	3 cut(s)	586, 738, 790
PleI	GAGTC	1 cut(s)	929
PpsI	GAGTC	1 cut(s)	929
PpuMI	RGGWCCY	1 cut(s)	199
PscI	ACATGT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	723, 1060
PspGI	CCWGG	2 cut(s)	723, 1060
PspN4I	GGNNCC	2 cut(s)	201, 377
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	930
PstNI	CAGNNNCTG	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	1057
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	11, 773, 900
RsaNI	GTAC	3 cut(s)	10, 772, 899
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	108, 138
SatI	GCNGC	3 cut(s)	585, 737, 789
Sau3AI	GATC	2 cut(s)	820, 1057
Sau96I	GGNCC	1 cut(s)	199
SbfI	CCTGCAGG	1 cut(s)	930
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	3 cut(s)	530, 725, 1062
SdaI	CCTGCAGG	1 cut(s)	930
SduI	GDGCHC	2 cut(s)	77, 216
SfcI	CTRYAG	3 cut(s)	891, 926, 940
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse8387I	CCTGCAGG	1 cut(s)	930
Sse9I	AATT	8 cut(s)	36, 105, 145, 163, 610, 673, 913, 1047
SspMI	CTAG	3 cut(s)	117, 207, 1097
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	3 cut(s)	528, 723, 1060
StyI	CCWWGG	2 cut(s)	195, 982
TaqI	TCGA	2 cut(s)	537, 1107
TasI	AATT	8 cut(s)	36, 105, 145, 163, 610, 673, 913, 1047
TatI	WGTACW	2 cut(s)	771, 898
TfiI	GAWTC	5 cut(s)	120, 300, 325, 461, 869
Tru1I	TTAA	2 cut(s)	108, 138
Tru9I	TTAA	2 cut(s)	108, 138
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	3 cut(s)	584, 736, 788
TspDTI	ATGAA	4 cut(s)	112, 231, 385, 528
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	3 cut(s)	36, 610, 1047
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	3 cut(s)	117, 207, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.