Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

51268792 .. 51276513

Gene Structure 7722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGGCCCCTTTCACTTTCGGTCAGGCATTGCCCCAGAGAGCCCAATGTAGAGCAGTATTCTCTACATTTAGACAACCACACCTTCCAAGAGTACTCAAAACCACAACTTCCAGCTAAGAGCTTCAATGAGTGTTTCCGAATTGTGGGTTCCTGCAATGGATTAATCCTCCTCTCAGACGATTACCTGACCGAGACCAATACCTTCGTTCTATGGAACCCCTCAATTCGAAAGTCCATCACTCTTCCTAAACCTCATATCCGACACTCTCAATACTATACAGTTTATGGGTTTGGATTTGATGCTAAGAAAGATGATTACAAGATAGTGCAGCTGGTGTATGAAGGTCACAACAGAGCTGGCCCTGAAGTTGTGCTCTACTCACTCAATTCAGCGTCTTGGAAAGCCATTACTGCAGCTTCTCCCAAGCGTGAGATTGCTCCGACAACGTGGTCTCAGGTTTTTGTTAATGGGTTTATGCATTTCATAGGGTATTCTAAGAAAGGAGAAGCTTATGACAATGTTGTTTTGGGATTTGATGTGTGTGAAGAGGTTTTTCATGAGATTAAAATGCCAAGGGACTTGGCTTCTGAGGTGCCAGACATGGAACTCATTGCAGTTAGTGGCAAGTCCCTTGCTCTGCAACACTGTGATAGTATACATAAGTGTTGCAATGTTGCAGTCATTTACTTCCATGATGAATTTACTATGTTAAAAGGAGTTGGACTCTTCACAATTATTCTTGGTGTGAGTTTATTCAACTGGTACAAGTATGAAAAACTAAAGAAGGGTCACACAAGTGAAGACGACATGGAGGAATCAGTCGTGATGAATGCTGCAAAAATGTTATTCTTGAAGAGACAGATGAGCAAGATGATGGCACATAAGAGCTTCAGGAAAGTTCATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

303

Amino Acids

34.78

Weight (kDa)

8.08

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	27 - 219	9.4e-24	F-box associated beta propeller domain
FBA_3	PF08268	41 - 217	2.1e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	701
AcuI	CTGAAG	2 cut(s)	387, 877
AfaI	GTAC	2 cut(s)	95, 767
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	127, 760, 856
AleI	CACNNNNGTG	1 cut(s)	798
AluBI	AGCT	7 cut(s)	116, 123, 334, 359, 419, 512, 891
AluI	AGCT	7 cut(s)	116, 123, 334, 359, 419, 512, 891
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	188, 459, 853
AoxI	GGCC	2 cut(s)	5, 361
ApeKI	GCWGC	3 cut(s)	331, 416, 836
ApoI	RAATTY	1 cut(s)	701
AseI	ATTAAT	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	6, 362
AsuII	TTCGAA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	810
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	3 cut(s)	343, 428, 823
BccI	CCATC	2 cut(s)	245, 871
BcoDI	GTCTC	3 cut(s)	188, 459, 853
BfmI	CTRYAG	1 cut(s)	414
BisI	GCNGC	3 cut(s)	332, 417, 837
BlsI	GCNGC	3 cut(s)	333, 418, 838
BmcAI	AGTACT	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	6, 362
BmiI	GGNNCC	4 cut(s)	8, 151, 218, 597
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	711, 743
Bpu14I	TTCGAA	1 cut(s)	229
BsaI	GGTCTC	2 cut(s)	188, 459
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	767
Bse3DI	GCAATG	4 cut(s)	28, 163, 612, 679
BseDI	CCNNGG	1 cut(s)	575
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMI	GCAATG	4 cut(s)	28, 163, 612, 679
BseMII	CTCAG	3 cut(s)	189, 470, 582
BseNI	ACTGG	1 cut(s)	767
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	3 cut(s)	343, 428, 823
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	7, 363
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	378
BslFI	GGGAC	2 cut(s)	593, 616
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	188, 459, 853
BsmFI	GGGAC	2 cut(s)	593, 616
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	7, 363
Bso31I	GGTCTC	2 cut(s)	188, 459
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	45, 378
BspANI	GGCC	2 cut(s)	7, 363
BspCNI	CTCAG	3 cut(s)	188, 469, 583
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	4 cut(s)	8, 151, 218, 597
BspMAI	CTGCAG	1 cut(s)	418
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	2 cut(s)	188, 459
BsrDI	GCAATG	4 cut(s)	28, 163, 612, 679
BsrI	ACTGG	1 cut(s)	767
BssECI	CCNNGG	1 cut(s)	575
BssNAI	GTATAC	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	575
Bst1107I	GTATAC	1 cut(s)	659
Bst4CI	ACNGT	2 cut(s)	283, 650
Bst6I	CTCTTC	4 cut(s)	249, 543, 734, 851
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	6 cut(s)	117, 175, 306, 456, 498, 591
BstMAI	GTCTC	3 cut(s)	188, 459, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	414
BstV1I	GCAGC	3 cut(s)	343, 428, 823
BstV2I	GAAGAC	1 cut(s)	810
BstZ17I	GTATAC	1 cut(s)	659
BsuRI	GGCC	2 cut(s)	7, 363
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	6, 362
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	94, 766
CviAII	CATG	4 cut(s)	560, 604, 695, 811
CviQI	GTAC	2 cut(s)	94, 766
DdeI	CTNAG	6 cut(s)	117, 175, 306, 456, 498, 591
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
Eam1104I	CTCTTC	4 cut(s)	249, 543, 734, 851
EarI	CTCTTC	4 cut(s)	249, 543, 734, 851
Eco130I	CCWWGG	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	2 cut(s)	188, 459
Eco57I	CTGAAG	2 cut(s)	387, 877
EcoO109I	RGGNCCY	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	4 cut(s)	563, 607, 698, 814
FaqI	GGGAC	2 cut(s)	593, 616
FatI	CATG	4 cut(s)	559, 603, 694, 810
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	332, 417, 837
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	332, 417, 837
GluI	GCNGC	3 cut(s)	332, 417, 837
HaeIII	GGCC	2 cut(s)	7, 363
HgaI	GACGC	1 cut(s)	384
Hin1II	CATG	4 cut(s)	563, 607, 698, 814
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	2 cut(s)	726, 818
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	5 cut(s)	140, 178, 263, 444, 592
Hpy188III	TCNNGA	4 cut(s)	560, 826, 853, 895
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	94, 214, 338, 781
HpyCH4III	ACNGT	2 cut(s)	283, 650
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	9 cut(s)	156, 331, 416, 481, 617, 643, 672, 680, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	6 cut(s)	117, 175, 306, 456, 498, 591
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	4 cut(s)	563, 607, 698, 814
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	3 cut(s)	343, 428, 823
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	347, 791
MboII	GAAGA	5 cut(s)	236, 560, 721, 815, 868
MhlI	GDGCHC	2 cut(s)	45, 378
MluCI	AATT	5 cut(s)	141, 225, 388, 701, 735
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	3 cut(s)	286, 467, 703
MnlI	CCTC	7 cut(s)	179, 182, 232, 264, 544, 586, 808
Mph1103I	ATGCAT	1 cut(s)	483
MseI	TTAA	4 cut(s)	164, 468, 567, 713
MslI	CAYNNNNRTG	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	838
MwoI	GCNNNNNNNGC	1 cut(s)	413
NlaIII	CATG	4 cut(s)	563, 607, 698, 814
NlaIV	GGNNCC	4 cut(s)	8, 151, 218, 597
NmuCI	GTSAC	2 cut(s)	347, 791
NsiI	ATGCAT	1 cut(s)	483
NspV	TTCGAA	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	798
PagI	TCATGA	1 cut(s)	559
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	1 cut(s)	818
PkrI	GCNGC	3 cut(s)	333, 418, 838
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	8, 151, 218, 597
PspPI	GGNCC	2 cut(s)	6, 362
PstI	CTGCAG	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	95, 767
RsaNI	GTAC	2 cut(s)	94, 766
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	4 cut(s)	164, 468, 567, 713
SatI	GCNGC	3 cut(s)	332, 417, 837
Sau96I	GGNCC	2 cut(s)	6, 362
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	1 cut(s)	720
SduI	GDGCHC	2 cut(s)	45, 378
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	798
Sse9I	AATT	5 cut(s)	141, 225, 388, 701, 735
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	283, 650
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	229
TaqII	GACCGA	2 cut(s)	10, 206
TasI	AATT	5 cut(s)	141, 225, 388, 701, 735
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	818
Tru1I	TTAA	4 cut(s)	164, 468, 567, 713
Tru9I	TTAA	4 cut(s)	164, 468, 567, 713
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	2 cut(s)	347, 791
TseI	GCWGC	3 cut(s)	331, 416, 836
Tsp45I	GTSAC	2 cut(s)	347, 791
TspDTI	ATGAA	7 cut(s)	357, 475, 548, 714, 789, 845, 893
TspRI	CASTG	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	164
XapI	RAATTY	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	658
ZrmI	AGTACT	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.