Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000019.1

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Reverse (-)

168155 .. 169309

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000019.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggaattctcaccattctgctaccttcctgaagaaatgatgatggaaattcttctgaggctacccatcaagtctatccttcagtccacctctgtttgcaaaccttggaactcccttattaaacgcaataccttcatcaaaaagcacctcaaactcacttcaaacagaatctccagagatggccctttgctccttctcaggcattgccccagggagcccaatgtagagcagtattctctacatttagacaaccacaccttccaagagtactcaaaaccacaacttccagctaagagcttcaatgagtgtttccgaattgtgggttcgtgcaatggattaatcctcctctcagacgattacctgaccgagaccaataccttcattctatggaacccctcaattcgaaagtccatcactcttcccaagcctcatatcccacactctcaataccatacagtttatgggtttgggtttgatgctgagagagatgattacaagatagtgaagatggtgtatgaaggtcacagcagagctagccctgaagttgagctctactcactcaattcaaggtcttggagaagcatcactgcagcttctcccaagtatgagattgctcgaacaatgtggtctcaggtttttgttaatgggtttatccatttcatagggtattgtatggaaggagaagcttttggcaatgttgttttgggatttgatgtgtgtgaagaggtttttcatgagattaaactgccaaaggacctggcttctgaggtgccaaacatggtcatttcagttattggcaagtcccttgctgtgcaacactatgatagtaaacataagtgttgcaatgtatgggttatgagagagtatggtgtggtggagtcatggacaaagcaatgcaccattgattttctcacccagaactttcgggtaacaaaggttttggggtctaggaagaatggtgaatttcttttagaaacgtatgaagccaagaagggagagatagtccttcatgatcccaagaaaaacacaaatgagcatcttggaatttatacagatccagggtacacaagtcttgaatattacacggagagtctagttttacttgatcaagcaacttcatttgcagattccatggagcaagaagaggaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

384

Amino Acids

44.4

Weight (kDa)

5.99

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	769
AclWI	GGATC	2 cut(s)	1007, 1049
AcsI	RAATTY	4 cut(s)	5, 48, 962, 1044
AcuI	CTGAAG	3 cut(s)	51, 65, 561
AfaI	GTAC	2 cut(s)	269, 1064
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	162, 301, 567, 1076
AjnI	CCWGG	3 cut(s)	209, 756, 1057
AluBI	AGCT	6 cut(s)	290, 297, 533, 550, 593, 686
AluI	AGCT	6 cut(s)	290, 297, 533, 550, 593, 686
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	362, 633
AlwI	GGATC	2 cut(s)	1007, 1049
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	4 cut(s)	5, 48, 962, 1044
AseI	ATTAAT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	182, 754
AsuHPI	GGTGA	3 cut(s)	3, 904, 971
AsuII	TTCGAA	1 cut(s)	403
AsuNHI	GCTAGC	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	754
BaeI	ACNNNNGTAYC	2 cut(s)	1054, 1087
BanI	GGYRCC	1 cut(s)	769
BanII	GRGCYC	2 cut(s)	219, 552
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	5 cut(s)	37, 74, 173, 419, 502
BciT130I	CCWGG	3 cut(s)	211, 758, 1059
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	2 cut(s)	362, 633
BfaI	CTAG	3 cut(s)	534, 948, 1094
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	3 cut(s)	211, 758, 1059
Bme18I	GGWCC	1 cut(s)	754
BmgT120I	GGNCC	2 cut(s)	182, 754
BmiI	GGNNCC	3 cut(s)	216, 392, 771
BmrFI	CCNGG	3 cut(s)	211, 758, 1059
BmsI	GCATC	3 cut(s)	466, 591, 1045
BmtI	GCTAGC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpmI	CTGGAG	1 cut(s)	157
Bpu14I	TTCGAA	1 cut(s)	403
BsaI	GGTCTC	2 cut(s)	362, 633
BsaJI	CCNNGG	5 cut(s)	104, 209, 210, 1058, 1131
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 987, 1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse3DI	GCAATG	5 cut(s)	202, 337, 700, 850, 899
BseBI	CCWGG	3 cut(s)	211, 758, 1059
BseDI	CCNNGG	5 cut(s)	104, 209, 210, 1058, 1131
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	5 cut(s)	202, 337, 700, 850, 899
BseMII	CTCAG	6 cut(s)	47, 211, 363, 471, 644, 756
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	602
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	362, 633
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	1 cut(s)	183
Bso31I	GGTCTC	2 cut(s)	362, 633
Bsp119I	TTCGAA	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	219, 552
Bsp143I	GATC	3 cut(s)	1012, 1054, 1105
Bsp19I	CCATGG	1 cut(s)	1131
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	6 cut(s)	48, 210, 362, 472, 643, 757
BspHI	TCATGA	2 cut(s)	733, 1009
BspLI	GGNNCC	3 cut(s)	216, 392, 771
BspMAI	CTGCAG	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	1007, 1049
BspT104I	TTCGAA	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	769
BspTNI	GGTCTC	2 cut(s)	362, 633
BsrDI	GCAATG	5 cut(s)	202, 337, 700, 850, 899
BssECI	CCNNGG	5 cut(s)	104, 209, 210, 1058, 1131
BssMI	GATC	3 cut(s)	1012, 1054, 1105
BssT1I	CCWWGG	2 cut(s)	104, 1131
Bst2UI	CCWGG	3 cut(s)	211, 758, 1059
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	3 cut(s)	423, 717, 1137
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	535
BstDEI	CTNAG	7 cut(s)	56, 197, 291, 349, 480, 630, 765
BstDSI	CCRYGG	1 cut(s)	1131
BstKTI	GATC	3 cut(s)	1015, 1057, 1108
BstMAI	GTCTC	2 cut(s)	362, 633
BstMBI	GATC	3 cut(s)	1012, 1054, 1105
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstNI	CCWGG	3 cut(s)	211, 758, 1059
BstSCI	CCNGG	3 cut(s)	209, 756, 1057
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	1054
BstYI	RGATCY	1 cut(s)	1054
BsuRI	GGCC	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	1131
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	1 cut(s)	535
CciI	TCATGA	2 cut(s)	733, 1009
Cfr13I	GGNCC	2 cut(s)	182, 754
Csp6I	GTAC	2 cut(s)	268, 1063
CviAII	CATG	5 cut(s)	734, 778, 882, 1010, 1132
CviQI	GTAC	2 cut(s)	268, 1063
DdeI	CTNAG	7 cut(s)	56, 197, 291, 349, 480, 630, 765
DpnI	GATC	3 cut(s)	1014, 1056, 1107
DpnII	GATC	3 cut(s)	1012, 1054, 1105
Eam1104I	CTCTTC	3 cut(s)	423, 717, 1137
EarI	CTCTTC	3 cut(s)	423, 717, 1137
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	2 cut(s)	104, 1131
Eco24I	GRGCYC	2 cut(s)	219, 552
Eco31I	GGTCTC	2 cut(s)	362, 633
Eco47I	GGWCC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	3 cut(s)	51, 65, 561
EcoICRI	GAGCTC	1 cut(s)	550
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	209, 756, 1057
EcoT14I	CCWWGG	2 cut(s)	104, 1131
EcoT38I	GRGCYC	2 cut(s)	219, 552
ErhI	CCWWGG	2 cut(s)	104, 1131
FaeI	CATG	5 cut(s)	737, 781, 885, 1013, 1135
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	5 cut(s)	733, 777, 881, 1009, 1131
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	1 cut(s)	591
FriOI	GRGCYC	2 cut(s)	219, 552
Fsp4HI	GCNGC	1 cut(s)	591
FspBI	CTAG	3 cut(s)	534, 948, 1094
GluI	GCNGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	737, 781, 885, 1013, 1135
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	4 cut(s)	168, 878, 1090, 1127
HphI	GGTGA	3 cut(s)	3, 904, 971
Hpy166II	GTNNAC	3 cut(s)	87, 830, 1065
Hpy188I	TCNGA	4 cut(s)	57, 314, 352, 766
Hpy188III	TCNNGA	5 cut(s)	29, 174, 734, 1010, 1073
Hpy8I	GTNNAC	3 cut(s)	87, 830, 1065
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	977
HpyCH4V	TGCA	7 cut(s)	99, 330, 590, 814, 843, 897, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	7 cut(s)	56, 197, 291, 349, 480, 630, 765
HpySE526I	ACGT	1 cut(s)	977
Hsp92II	CATG	5 cut(s)	737, 781, 885, 1013, 1135
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	1012, 1054, 1105
LmnI	GCTCC	3 cut(s)	195, 214, 1135
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	3 cut(s)	466, 591, 1045
MaeI	CTAG	3 cut(s)	534, 948, 1094
MaeII	ACGT	1 cut(s)	977
MaeIII	GTNAC	2 cut(s)	521, 928
MalI	GATC	3 cut(s)	1014, 1056, 1107
MboI	GATC	3 cut(s)	1012, 1054, 1105
MboII	GAAGA	7 cut(s)	44, 44, 410, 517, 734, 964, 1154
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	2 cut(s)	219, 552
MluCI	AATT	7 cut(s)	5, 48, 315, 399, 562, 962, 1044
MlyI	GAGTC	2 cut(s)	887, 1099
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	4 cut(s)	120, 338, 642, 741
MspR9I	CCNGG	3 cut(s)	211, 758, 1059
MvaI	CCWGG	3 cut(s)	211, 758, 1059
MwoI	GCNNNNNNNGC	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	1131
NdeII	GATC	3 cut(s)	1012, 1054, 1105
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	5 cut(s)	737, 781, 885, 1013, 1135
NlaIV	GGNNCC	3 cut(s)	216, 392, 771
NmuCI	GTSAC	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	403
PagI	TCATGA	2 cut(s)	733, 1009
PasI	CCCWGGG	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	168, 1127
PkrI	GCNGC	1 cut(s)	592
PleI	GAGTC	2 cut(s)	886, 1098
PpsI	GAGTC	2 cut(s)	886, 1098
PpuMI	RGGWCCY	1 cut(s)	754
PshBI	ATTAAT	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	3 cut(s)	209, 756, 1057
PspGI	CCWGG	3 cut(s)	209, 756, 1057
PspN4I	GGNNCC	3 cut(s)	216, 392, 771
PspPI	GGNCC	2 cut(s)	182, 754
PspPPI	RGGWCCY	1 cut(s)	754
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	1054
RsaI	GTAC	2 cut(s)	269, 1064
RsaNI	GTAC	2 cut(s)	268, 1063
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	120, 338, 642, 741
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	3 cut(s)	1012, 1054, 1105
Sau96I	GGNCC	2 cut(s)	182, 754
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	2 cut(s)	887, 1099
ScrFI	CCNGG	3 cut(s)	211, 758, 1059
SduI	GDGCHC	2 cut(s)	219, 552
SfaNI	GCATC	3 cut(s)	466, 591, 1045
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	403
SinI	GGWCC	1 cut(s)	754
Sse9I	AATT	7 cut(s)	5, 48, 315, 399, 562, 962, 1044
SspI	AATATT	1 cut(s)	1079
SspMI	CTAG	3 cut(s)	534, 948, 1094
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	3 cut(s)	209, 756, 1057
StyI	CCWWGG	2 cut(s)	104, 1131
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	980
TaqI	TCGA	2 cut(s)	403, 616
TaqII	GACCGA	1 cut(s)	380
TasI	AATT	7 cut(s)	5, 48, 315, 399, 562, 962, 1044
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	168, 1127
Tru1I	TTAA	4 cut(s)	120, 338, 642, 741
Tru9I	TTAA	4 cut(s)	120, 338, 642, 741
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	8 cut(s)	124, 370, 531, 649, 722, 996, 998, 1107
TspGWI	ACGGA	1 cut(s)	1100
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	754
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	4 cut(s)	5, 48, 962, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	3 cut(s)	534, 948, 1094
ZrmI	AGTACT	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.