Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Reverse (-)

39552438 .. 39555068

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCGAAACTAAGGACCAAGATGAAACCACATTGCACGCCAAGCGCAAATCCGATCCCAGCTGCGAAGAAGACCAAGCTGACTACCCCAACAAATCCCAGAAGCTTCAACTTACCGGCAACAATTCTCATGAATCCTCACTCACACAAGACAACAAAGTCGAATTACAAGGCAATGCGGATCCCCAAGTAGAAGACGAGGATGACGAGGAGGAATACGAGGAAGAAGACGGTGAAGAGTCCAATGGGAAATCCGAGGCGGACCGCAAGGGGAAGGGGGTTATGAGAGATGATAAGGGCAAAGGTATACTGATCGAAGAAGATGATGAAAACGAGGATAGCAGCGACGACTCCTCCTCCTCCAGCAGCGAAGGCGGGAGCGAATTCGAAGACGGCGACAGCGATTTGTCGGATGATCCTCTTGCTGAAGTCGATTTGGACAACATTCTTCCTTCCAGGACTCGGAGACGGCAGGTTCAGCCTGGGGTTTATATCCGCAGTGATAACAACGGAAAAAGCAACAACGATGACAGTGATGATAGCGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.26

Weight (kDa)

4.05

Isoelectric Point (pI)

71.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	5 cut(s)	179, 260, 265, 375, 496
AclWI	GGATC	4 cut(s)	50, 176, 189, 410
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	455, 481
AluBI	AGCT	3 cut(s)	63, 80, 106
AluI	AGCT	3 cut(s)	63, 80, 106
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	4 cut(s)	50, 176, 189, 410
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	63, 342, 366
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	16, 262
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	387
AvaII	GGWCC	2 cut(s)	16, 262
BamHI	GGATCC	1 cut(s)	181
BbsI	GAAGAC	4 cut(s)	78, 201, 234, 396
BbvI	GCAGC	3 cut(s)	50, 354, 378
BceAI	ACGGC	2 cut(s)	409, 485
BciT130I	CCWGG	2 cut(s)	457, 483
BcoDI	GTCTC	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	3 cut(s)	64, 343, 367
BlsI	GCNGC	3 cut(s)	65, 344, 368
Bme1390I	CCNGG	2 cut(s)	457, 483
Bme18I	GGWCC	2 cut(s)	16, 262
BmgT120I	GGNCC	2 cut(s)	16, 262
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	457, 483
BpiI	GAAGAC	4 cut(s)	78, 201, 234, 396
BpmI	CTGGAG	1 cut(s)	346
Bpu14I	TTCGAA	1 cut(s)	387
BsaJI	CCNNGG	2 cut(s)	255, 482
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 341, 368, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	32, 181
BseBI	CCWGG	2 cut(s)	457, 483
BseDI	CCNNGG	2 cut(s)	255, 482
BseGI	GGATG	2 cut(s)	208, 418
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	2 cut(s)	32, 181
BseRI	GAGGAG	4 cut(s)	224, 343, 346, 349
BseXI	GCAGC	3 cut(s)	50, 354, 378
BseYI	CCCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	387
Bsp143I	GATC	4 cut(s)	55, 181, 312, 415
BspACI	CCGC	5 cut(s)	179, 260, 265, 375, 496
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	4 cut(s)	50, 176, 189, 410
BspT104I	TTCGAA	1 cut(s)	387
BsrDI	GCAATG	2 cut(s)	32, 181
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	255, 482
BssMI	GATC	4 cut(s)	55, 181, 312, 415
BssNAI	GTATAC	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	457, 483
Bst4CI	ACNGT	2 cut(s)	233, 533
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	208, 418
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	4 cut(s)	58, 184, 315, 418
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	55, 181, 312, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 372, 478
BstNI	CCWGG	2 cut(s)	457, 483
BstSCI	CCNGG	2 cut(s)	455, 481
BstV1I	GCAGC	3 cut(s)	50, 354, 378
BstV2I	GAAGAC	4 cut(s)	78, 201, 234, 396
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BstZ17I	GTATAC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	208, 418
BtsI	GCAGTG	1 cut(s)	505
BtsIMutI	CAGTG	2 cut(s)	505, 538
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	130
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	16, 262
CpoI	CGGWCCG	1 cut(s)	262
CspI	CGGWCCG	1 cut(s)	262
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	5 cut(s)	5, 63, 80, 106, 481
CviKI_1	RGCY	5 cut(s)	5, 63, 80, 106, 481
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	57, 183, 314, 417
DpnII	GATC	4 cut(s)	55, 181, 312, 415
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	16, 262
Eco57I	CTGAAG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	455, 481
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	1 cut(s)	134
FaiI	YATR	4 cut(s)	132, 284, 308, 492
FatI	CATG	1 cut(s)	130
FauI	CCCGC	1 cut(s)	368
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	64, 343, 367
FokI	GGATG	2 cut(s)	215, 425
Fsp4HI	GCNGC	3 cut(s)	64, 343, 367
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	64, 343, 367
GsaI	CCCAGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	4 cut(s)	134, 239, 350, 460
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	4 cut(s)	55, 256, 412, 465
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	268, 365, 462
HpyCH4III	ACNGT	2 cut(s)	233, 533
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 372, 478
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	55, 181, 312, 415
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	9 cut(s)	73, 113, 130, 376, 442, 458, 468, 469, 495
Lsp1109I	GCAGC	3 cut(s)	50, 354, 378
MalI	GATC	4 cut(s)	57, 183, 314, 417
MboI	GATC	4 cut(s)	55, 181, 312, 415
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	3 cut(s)	124, 164, 383
MlyI	GAGTC	3 cut(s)	248, 344, 454
MmeI	TCCRAC	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	457, 483
MvaI	CCWGG	2 cut(s)	457, 483
MwoI	GCNNNNNNNGC	3 cut(s)	43, 372, 478
NdeII	GATC	4 cut(s)	55, 181, 312, 415
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	183
NspV	TTCGAA	1 cut(s)	387
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 393, 399
PfeI	GAWTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	65, 344, 368
PleI	GAGTC	3 cut(s)	247, 344, 454
PpsI	GAGTC	3 cut(s)	247, 344, 454
Psp6I	CCWGG	2 cut(s)	455, 481
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	455, 481
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	16, 262
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	63
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SatI	GCNGC	3 cut(s)	64, 343, 367
Sau3AI	GATC	4 cut(s)	55, 181, 312, 415
Sau96I	GGNCC	2 cut(s)	16, 262
SchI	GAGTC	3 cut(s)	248, 344, 454
ScrFI	CCNGG	2 cut(s)	457, 483
SetI	ASST	5 cut(s)	65, 82, 108, 307, 477
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	2 cut(s)	16, 262
Sse9I	AATT	3 cut(s)	124, 164, 383
SsiI	CCGC	5 cut(s)	179, 260, 265, 375, 496
StyD4I	CCNGG	2 cut(s)	455, 481
TaaI	ACNGT	2 cut(s)	233, 533
TaqI	TCGA	4 cut(s)	162, 315, 387, 432
TasI	AATT	3 cut(s)	124, 164, 383
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	505, 538
TseI	GCWGC	3 cut(s)	63, 342, 366
TspDTI	ATGAA	3 cut(s)	39, 147, 342
TspGWI	ACGGA	1 cut(s)	525
TspRI	CASTG	2 cut(s)	505, 538
VpaK11BI	GGWCC	2 cut(s)	16, 262
XapI	RAATTY	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.