Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Forward (+)

52283552 .. 52286941

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCTTCAGCCACCGGCGGCGGCATTGGCGGATCTCTTTATTTTTTCACCTAGCTCGTCCCGAGGTTCTGGTGCTTCAATGCGCAAGGGTTTGGCTTCGTTGTTTGGTGCAGGGGCTATTGGGAGTGCGAGCAATGCGAAGATTGTCAGCTCTAAGGCAGATCGCGGTGCTAAGAGTGGGGAACTGATCGACATGGCTTCGGTGGAAGGGCAGACGTCGCTGGACTCTAAGGGTGTGGGAAATTCCAGCTTGGTGGAGAAAGGTATAGCGGGGCTAGATACTGCATTCCTGAAGAATTGGGGGAGTACTTTTGCTTCCCCTCCTGTTCTGGATGTTATGAAGAAGATGGAAATGCTTGTGGTTGTAGCTCCTTCACCTGTTATTATGGATAAGGATAAGAGGAGGAGGACGAAGAGGAGGAATACGACGATGAAGAAGAAGAAGAAGAAGAAGACGGCCGGTGAATTAGACTCATCCGTGGTGGATCGCAAGGGGAAGGGAATTATGAGAGATGATAAGGGCAAAGGGATACTGATAGAAGATGAAGATGACGAGGAGGATAGCAACGATGACTCCTCCAGCGACGACGCTGGAAGCGAATTTGAAGATGGCGACAGCGATTTGTCCGACGATCCACTTGCGAAGTTCGATTTGGACAACATTCTTCCTTCAAGGACTCGGAGACGGCTGGTTCAATTTGGGGTTTACATCCGCAATGATAACAATGCAAACAACAATAAAGGACAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

26.79

Weight (kDa)

7.77

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	83
AccII	CGCG	1 cut(s)	165
AciI	CCGC	6 cut(s)	17, 20, 29, 165, 269, 712
AclWI	GGATC	3 cut(s)	39, 492, 626
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	241, 599
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	307
AgsI	TTSAA	4 cut(s)	78, 605, 672, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	54, 150, 249, 368
AluI	AGCT	4 cut(s)	54, 150, 249, 368
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	39, 492, 626
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	456
ApoI	RAATTY	2 cut(s)	241, 599
AspLEI	GCGC	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	39, 366, 473
AvaI	CYCGRG	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	298, 330
BbsI	GAAGAC	1 cut(s)	458
BccI	CCATC	2 cut(s)	340, 602
BceAI	ACGGC	2 cut(s)	471, 701
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciVI	GTATCC	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	676
BfaI	CTAG	2 cut(s)	51, 275
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	18, 21
BlsI	GCNGC	2 cut(s)	19, 22
BmcAI	AGTACT	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	458
BpmI	CTGGAG	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	61, 477
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bse118I	RCCGGY	2 cut(s)	13, 458
Bse3DI	GCAATG	2 cut(s)	139, 721
BseDI	CCNNGG	2 cut(s)	61, 477
BseGI	GGATG	3 cut(s)	337, 473, 708
BseMI	GCAATG	2 cut(s)	139, 721
BseRI	GAGGAG	5 cut(s)	415, 418, 430, 565, 569
BseX3I	CGGCCG	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	14, 459
BslFI	GGGAC	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	676
BsmBI	CGTCTC	1 cut(s)	676
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	5 cut(s)	31, 160, 186, 484, 631
BspACI	CCGC	6 cut(s)	17, 20, 29, 165, 269, 712
BspANI	GGCC	1 cut(s)	458
BspFNI	CGCG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	39, 492, 626
BsrDI	GCAATG	2 cut(s)	139, 721
BsrFI	RCCGGY	2 cut(s)	13, 458
BssAI	RCCGGY	2 cut(s)	13, 458
BssECI	CCNNGG	2 cut(s)	61, 477
BssMI	GATC	5 cut(s)	31, 160, 186, 484, 631
BssNI	GRCGYC	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	407
BstACI	GRCGYC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	153, 171, 228
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	337, 473, 708
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	34, 163, 189, 487, 634
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	5 cut(s)	31, 160, 186, 484, 631
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 134, 217
BstUI	CGCG	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	31
BstZI	CGGCCG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	337, 473, 708
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	2 cut(s)	13, 458
CseI	GACGC	1 cut(s)	596
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	153, 171, 228
DpnI	GATC	5 cut(s)	33, 162, 188, 486, 633
DpnII	GATC	5 cut(s)	31, 160, 186, 484, 631
EaeI	YGGCCR	1 cut(s)	456
EagI	CGGCCG	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	456
Eco52I	CGGCCG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	676
FaeI	CATG	1 cut(s)	196
FaiI	YATR	6 cut(s)	194, 266, 338, 386, 506, 751
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	1 cut(s)	192
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	18, 21
FokI	GGATG	3 cut(s)	344, 460, 695
Fsp4HI	GCNGC	2 cut(s)	18, 21
FspBI	CTAG	2 cut(s)	51, 275
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	2 cut(s)	18, 21
GsuI	CTGGAG	1 cut(s)	562
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	2 cut(s)	14, 459
HgaI	GACGC	1 cut(s)	596
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HinfI	GANTC	4 cut(s)	224, 470, 572, 676
HpaII	CCGG	2 cut(s)	14, 459
HphI	GGTGA	3 cut(s)	39, 366, 473
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	2 cut(s)	628, 681
Hpy188III	TCNNGA	3 cut(s)	60, 289, 329
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	5 cut(s)	220, 430, 587, 590, 632
HpyAV	CCTTC	4 cut(s)	200, 381, 490, 678
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	110, 284, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 134, 217
HpyF3I	CTNAG	3 cut(s)	153, 171, 228
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	31, 160, 186, 484, 631
LmnI	GCTCC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	51, 275
MaeII	ACGT	1 cut(s)	215
MalI	GATC	5 cut(s)	33, 162, 188, 486, 633
MboI	GATC	5 cut(s)	31, 160, 186, 484, 631
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	6 cut(s)	241, 295, 464, 501, 599, 695
MlyI	GAGTC	4 cut(s)	218, 464, 566, 670
MmeI	TCCRAC	1 cut(s)	651
MspI	CCGG	2 cut(s)	14, 459
Mva1269I	GAATGC	1 cut(s)	284
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	26, 134, 217
NdeII	GATC	5 cut(s)	31, 160, 186, 484, 631
NlaIII	CATG	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PctI	GAATGC	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	19, 22
PleI	GAGTC	4 cut(s)	218, 464, 566, 670
PpsI	GAGTC	4 cut(s)	218, 464, 566, 670
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SatI	GCNGC	2 cut(s)	18, 21
Sau3AI	GATC	5 cut(s)	31, 160, 186, 484, 631
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	4 cut(s)	218, 464, 566, 670
SetI	ASST	9 cut(s)	52, 56, 67, 152, 218, 251, 265, 370, 379
SgrAI	CRCCGGYG	1 cut(s)	13
Sse9I	AATT	6 cut(s)	241, 295, 464, 501, 599, 695
SsiI	CCGC	6 cut(s)	17, 20, 29, 165, 269, 712
SspMI	CTAG	2 cut(s)	51, 275
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	189, 648
TasI	AATT	6 cut(s)	241, 295, 464, 501, 599, 695
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	2 cut(s)	20, 23
TspDTI	ATGAA	3 cut(s)	353, 446, 558
TspGWI	ACGGA	1 cut(s)	466
XapI	RAATTY	2 cut(s)	241, 599
XspI	CTAG	2 cut(s)	51, 275
ZraI	GACGTC	1 cut(s)	216
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.