Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001118.1

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Reverse (-)

26827 .. 28047

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001118.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgtgggcaggtgggttgggaatggagctcggtggaggcgggctgggaatggagctcggtggaggcgggctggttggaaatgggatcggagttgggatggtcggagctggaattggggaccaagaagccacattgcacgtgaagcgccaacccaatcccagatgcgaagaccaagctgactaccctaacaaatcccacaagcttcaagtctccgacaacaattctcaaggaaaaactcaagaaccagaaaattcgaagagcaattccaaagctaaattacaaggcaatgcagatctcgaagtagaagacgaggaggacaaatatgataatgaagaagaagaagaagacagtgaattagactcatccgtggtggatcgcaaggggaaggggattatgagatatgataagggcaaagggatactgatagaagatgaagatgacaaggaggataatgacaatgactcctccagcgacgacgctggaagagaatttgaagatagcgacagtgatttgtccgacgatcctcttgcgaaggtcgatttggacaacattcttctttccaggactcggagacggcaggttcaacttggggtttacatccacaatgataacaacgcaaacaacaataaaggacaaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.11

Weight (kDa)

4.32

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AciI	CCGC	2 cut(s)	39, 66
AclWI	GGATC	3 cut(s)	92, 381, 515
AcsI	RAATTY	2 cut(s)	250, 488
AcvI	CACGTG	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	567
AgsI	TTSAA	3 cut(s)	206, 494, 584
AjnI	CCWGG	1 cut(s)	560
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	6 cut(s)	28, 55, 107, 176, 202, 272
AluI	AGCT	6 cut(s)	28, 55, 107, 176, 202, 272
Alw21I	GWGCWC	2 cut(s)	30, 57
Alw26I	GTCTC	2 cut(s)	214, 565
AlwI	GGATC	3 cut(s)	92, 381, 515
ApoI	RAATTY	2 cut(s)	250, 488
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	118
BanII	GRGCYC	2 cut(s)	30, 57
BbrPI	CACGTG	1 cut(s)	139
BbsI	GAAGAC	3 cut(s)	174, 312, 351
Bbv12I	GWGCWC	2 cut(s)	30, 57
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	590
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	214, 565
BfoI	RGCGCY	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	568
BfuI	GTATCC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	562
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	152
BpiI	GAAGAC	3 cut(s)	174, 312, 351
BpmI	CTGGAG	1 cut(s)	451
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	210, 222
BsaAI	YACGTR	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse3DI	GCAATG	2 cut(s)	131, 292
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	102, 362, 597
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMI	GCAATG	2 cut(s)	131, 292
BseRI	GAGGAG	2 cut(s)	326, 454
BseYI	CCCAGC	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	30, 57
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	567
BsmAI	GTCTC	2 cut(s)	214, 565
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	30, 57
Bsp143I	GATC	4 cut(s)	84, 292, 373, 520
BspACI	CCGC	2 cut(s)	39, 66
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	3 cut(s)	92, 381, 515
BspQI	GCTCTTC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	131, 292
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	84, 292, 373, 520
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	350, 506
Bst6I	CTCTTC	2 cut(s)	251, 478
BstBAI	YACGTR	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	41, 68
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	102, 362, 597
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	4 cut(s)	87, 295, 376, 523
BstMAI	GTCTC	2 cut(s)	214, 565
BstMBI	GATC	4 cut(s)	84, 292, 373, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstV2I	GAAGAC	3 cut(s)	174, 312, 351
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	411
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	102, 362, 597
BtsIMutI	CAGTG	2 cut(s)	355, 511
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	41, 68
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	118
CseI	GACGC	1 cut(s)	485
CviJI	RGCY	9 cut(s)	28, 43, 55, 70, 107, 128, 176, 202, 272
CviKI_1	RGCY	9 cut(s)	28, 43, 55, 70, 107, 128, 176, 202, 272
DpnI	GATC	4 cut(s)	86, 294, 375, 522
DpnII	GATC	4 cut(s)	84, 292, 373, 520
Eam1104I	CTCTTC	2 cut(s)	251, 478
EarI	CTCTTC	2 cut(s)	251, 478
Ecl136II	GAGCTC	2 cut(s)	28, 55
Eco24I	GRGCYC	2 cut(s)	30, 57
Eco47I	GGWCC	1 cut(s)	118
Eco53kI	GAGCTC	2 cut(s)	28, 55
Eco72I	CACGTG	1 cut(s)	139
EcoICRI	GAGCTC	2 cut(s)	28, 55
EcoRII	CCWGG	1 cut(s)	560
EcoT38I	GRGCYC	2 cut(s)	30, 57
Esp3I	CGTCTC	1 cut(s)	565
FaiI	YATR	4 cut(s)	324, 395, 402, 640
FaqI	GGGAC	1 cut(s)	131
FauI	CCCGC	2 cut(s)	32, 59
FokI	GGATG	3 cut(s)	109, 349, 584
FriOI	GRGCYC	2 cut(s)	30, 57
GlaI	GCGC	1 cut(s)	146
GsaI	CCCAGC	1 cut(s)	47
GsuI	CTGGAG	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	148
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	3 cut(s)	359, 461, 565
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	5 cut(s)	89, 104, 214, 517, 570
Hpy188III	TCNNGA	2 cut(s)	239, 296
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	3 cut(s)	476, 479, 521
HpyAV	CCTTC	2 cut(s)	379, 526
HpyCH4III	ACNGT	2 cut(s)	350, 506
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	136, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	138
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	84, 292, 373, 520
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	3 cut(s)	25, 52, 104
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	138
MalI	GATC	4 cut(s)	86, 294, 375, 522
MboI	GATC	4 cut(s)	84, 292, 373, 520
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	30, 57
MluCI	AATT	7 cut(s)	111, 220, 250, 262, 275, 353, 488
MlyI	GAGTC	3 cut(s)	353, 455, 559
MmeI	TCCRAC	4 cut(s)	55, 82, 237, 540
MnlI	CCTC	7 cut(s)	29, 56, 304, 307, 439, 475, 534
MspR9I	CCNGG	1 cut(s)	562
MvaI	CCWGG	1 cut(s)	562
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	4 cut(s)	84, 292, 373, 520
NlaIV	GGNNCC	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	560
PleI	GAGTC	3 cut(s)	353, 455, 559
PmaCI	CACGTG	1 cut(s)	139
PmlI	CACGTG	1 cut(s)	139
PpsI	GAGTC	3 cut(s)	353, 455, 559
Ppu21I	YACGTR	1 cut(s)	139
Psp124BI	GAGCTC	2 cut(s)	30, 57
Psp6I	CCWGG	1 cut(s)	560
PspCI	CACGTG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	292
SacI	GAGCTC	2 cut(s)	30, 57
SapI	GCTCTTC	1 cut(s)	251
Sau3AI	GATC	4 cut(s)	84, 292, 373, 520
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	353, 455, 559
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	2 cut(s)	30, 57
SfaNI	GCATC	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	1 cut(s)	118
SmlI	CTYRAG	2 cut(s)	225, 237
SmoI	CTYRAG	2 cut(s)	225, 237
Sse9I	AATT	7 cut(s)	111, 220, 250, 262, 275, 353, 488
SsiI	CCGC	2 cut(s)	39, 66
SstI	GAGCTC	2 cut(s)	30, 57
StyD4I	CCNGG	1 cut(s)	560
TaaI	ACNGT	2 cut(s)	350, 506
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	254, 297, 537
TasI	AATT	7 cut(s)	111, 220, 250, 262, 275, 353, 488
TscAI	CASTG	2 cut(s)	355, 511
TspDTI	ATGAA	2 cut(s)	345, 447
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	2 cut(s)	355, 511
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	250, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.