Rmu_co8090046.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8090046.1
OG0005343
Physical Location & Seq
Forward (+)
1 .. 449
449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8090046.1_g000001.1.cds

Sequence Viewer

Length: 449 bp
cacaaaatttgaagagcaattccgaagctgaattacaaggcaatgcagatcccgaagcagaagacgaggaggaatgcggcgacgatgatgaagaagacggtgaagagtctaatgggaaatccgtggtggatcgcaaggggaaggggattgtgagagatgataagggcaaagggatactgatagaagaagaagaagatgatgatgatgaagatggcgaggaggatagcgacgacgactcctccaccgacgacggcggaagcgaattcgaagacggcgacagcgatttatcggacgatcctcttgcggaggtcgatttggacaacattcttccttccaggactcggagacggcaggttcagcctggggtttacatccgcaatgataacaacgcaaaccacaaccacaacaacgatgacgatgacagtgatgatagcgatggtttgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.22

Weight (kDa)

4.05

Isoelectric Point (pI)

67.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 342
AciI CCGC 4 cut(s) 77, 254, 304, 375
AclWI GGATC 3 cut(s) 43, 137, 289
AcsI RAATTY 2 cut(s) 6, 262
AfiI CCNNNNNNNGG 1 cut(s) 341
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 2 cut(s) 334, 360
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 3 cut(s) 43, 137, 289
ApoI RAATTY 2 cut(s) 6, 262
AsuHPI GGTGA 1 cut(s) 112
AsuII TTCGAA 1 cut(s) 266
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbsI GAAGAC 3 cut(s) 68, 101, 275
BccI CCATC 2 cut(s) 205, 430
BceAI ACGGC 3 cut(s) 267, 288, 364
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 2 cut(s) 336, 362
BciVI GTATCC 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 342
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 336, 362
BmrFI CCNGG 2 cut(s) 336, 362
BpiI GAAGAC 3 cut(s) 68, 101, 275
Bpu14I TTCGAA 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 122, 361
BsaXI ACNNNNNCTCC 4 cut(s) 220, 223, 250, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 341
Bse3DI GCAATG 2 cut(s) 48, 384
BseBI CCWGG 2 cut(s) 336, 362
BseDI CCNNGG 2 cut(s) 122, 361
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMI GCAATG 2 cut(s) 48, 384
BseRI GAGGAG 3 cut(s) 82, 228, 232
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 79
Bsp119I TTCGAA 1 cut(s) 266
Bsp143I GATC 3 cut(s) 48, 129, 294
BspACI CCGC 4 cut(s) 77, 254, 304, 375
BspMI ACCTGC 1 cut(s) 342
BspPI GGATC 3 cut(s) 43, 137, 289
BspQI GCTCTTC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 266
BsrDI GCAATG 2 cut(s) 48, 384
BssECI CCNNGG 2 cut(s) 122, 361
BssMI GATC 3 cut(s) 48, 129, 294
Bst2UI CCWGG 2 cut(s) 336, 362
Bst4CI ACNGT 2 cut(s) 100, 424
Bst6I CTCTTC 2 cut(s) 7, 98
BstBI TTCGAA 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 3 cut(s) 51, 132, 297
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 48, 129, 294
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 336, 362
BstSCI CCNGG 2 cut(s) 334, 360
BstV2I GAAGAC 3 cut(s) 68, 101, 275
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuI GTATCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 429
BveI ACCTGC 1 cut(s) 342
CviJI RGCY 2 cut(s) 28, 360
CviKI_1 RGCY 2 cut(s) 28, 360
DpnI GATC 3 cut(s) 50, 131, 296
DpnII GATC 3 cut(s) 48, 129, 294
Eam1104I CTCTTC 2 cut(s) 7, 98
EarI CTCTTC 2 cut(s) 7, 98
EciI GGCGGA 1 cut(s) 269
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 334, 360
Esp3I CGTCTC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 106, 235, 339
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 24, 291, 344
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 5 cut(s) 85, 232, 235, 250, 253
HpyAV CCTTC 2 cut(s) 135, 341
HpyCH4III ACNGT 2 cut(s) 100, 424
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 48, 129, 294
LguI GCTCTTC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 321, 337, 347, 348, 374
MalI GATC 3 cut(s) 50, 131, 296
MboI GATC 3 cut(s) 48, 129, 294
MflI RGATCY 1 cut(s) 48
MluCI AATT 4 cut(s) 6, 18, 31, 262
MlyI GAGTC 3 cut(s) 115, 229, 333
MnlI CCTC 7 cut(s) 60, 63, 210, 213, 249, 300, 308
MspR9I CCNGG 2 cut(s) 336, 362
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 2 cut(s) 336, 362
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 3 cut(s) 48, 129, 294
NspV TTCGAA 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 3 cut(s) 257, 272, 278
PctI GAATGC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 3 cut(s) 114, 229, 333
PpsI GAGTC 3 cut(s) 114, 229, 333
Psp6I CCWGG 2 cut(s) 334, 360
PspGI CCWGG 2 cut(s) 334, 360
PsuI RGATCY 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 7
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 3 cut(s) 48, 129, 294
SchI GAGTC 3 cut(s) 115, 229, 333
ScrFI CCNGG 2 cut(s) 336, 362
SetI ASST 3 cut(s) 30, 311, 356
SfuI TTCGAA 1 cut(s) 266
Sse9I AATT 4 cut(s) 6, 18, 31, 262
SsiI CCGC 4 cut(s) 77, 254, 304, 375
StyD4I CCNGG 2 cut(s) 334, 360
TaaI ACNGT 2 cut(s) 100, 424
TaqI TCGA 2 cut(s) 266, 311
TasI AATT 4 cut(s) 6, 18, 31, 262
TauI GCSGC 1 cut(s) 80
TscAI CASTG 1 cut(s) 429
TspDTI ATGAA 2 cut(s) 104, 221
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 1 cut(s) 429
XapI RAATTY 2 cut(s) 6, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.