Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Reverse (-)

89173894 .. 89174502

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG683200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCGAAACTAAGGACCAAGAAGAAGCCACATTGCACGCGAAGCGCAAACCCGATCCTAGCTGCGAAGACCAAGCCGACTACCCCAACAAATCCCTCAAGCTTCAAGTCTCCGGCAACAATTCTCAAGGAAAAACTCAAGAACCACAAAATTTGAAGAGCAATTCCGAAGCTGAATTACAAGGCAATGCAGATCCCGAAGCAGAAGACGAGGAGGACGAAGAGGAGGAATACGGCGACGGTGATGAAGAAGACAGTGAAGAGTCTAATGGGAAATCCGTGGTGGATCGCAAGGGGAAGGGGATTATGAGAGATGATAAGGGCAAAGGGATACTGATAGAAGAAGAAGAAGAAGAAGATGAAGATGGCGAGGAGGATAGCGACGACGACTCCTCCACCGACGACGACGACGGTGGAAGCGAATTCGAAGACGGCGACAGCGATTTATCGGACGATCCTCTTGCGGAGGTCGATTTGGACAACATTCTTCCGTCCAGGACTCGGAGACGGCAGGTTCAGCCTGGGGTTTACATCCGCAATGATAACAACGCAAACCACAACCACAACAACGATGACGATGACAGTGATGATAGCGATGGTTTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

202

Amino Acids

22.35

Weight (kDa)

4.05

Isoelectric Point (pI)

71.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	502
AccII	CGCG	1 cut(s)	41
AciI	CCGC	2 cut(s)	464, 535
AclWI	GGATC	4 cut(s)	50, 188, 294, 449
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	151, 422
AfiI	CCNNNNNNNGG	1 cut(s)	501
AgsI	TTSAA	2 cut(s)	107, 157
AjnI	CCWGG	2 cut(s)	494, 520
AluBI	AGCT	3 cut(s)	63, 103, 173
AluI	AGCT	3 cut(s)	63, 103, 173
Alw26I	GTCTC	2 cut(s)	115, 499
AlwI	GGATC	4 cut(s)	50, 188, 294, 449
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	151, 422
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	254
AsuII	TTCGAA	1 cut(s)	426
AvaII	GGWCC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
BbsI	GAAGAC	4 cut(s)	75, 213, 258, 435
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	359, 590
BceAI	ACGGC	3 cut(s)	250, 448, 524
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	2 cut(s)	496, 522
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	2 cut(s)	115, 499
BfaI	CTAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	324
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	496, 522
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	496, 522
BpiI	GAAGAC	4 cut(s)	75, 213, 258, 435
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	3 cut(s)	83, 111, 123
BsaJI	CCNNGG	2 cut(s)	279, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	374, 377, 404, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse3DI	GCAATG	3 cut(s)	32, 193, 544
BseBI	CCWGG	2 cut(s)	496, 522
BseDI	CCNNGG	2 cut(s)	279, 521
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	3 cut(s)	32, 193, 544
BseRI	GAGGAG	4 cut(s)	227, 239, 382, 386
BseXI	GCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	115, 499
BsmBI	CGTCTC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	55, 193, 286, 454
BspACI	CCGC	2 cut(s)	464, 535
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	4 cut(s)	50, 188, 294, 449
BspQI	GCTCTTC	1 cut(s)	152
BspT104I	TTCGAA	1 cut(s)	426
BsrDI	GCAATG	3 cut(s)	32, 193, 544
BssECI	CCNNGG	2 cut(s)	279, 521
BssMI	GATC	4 cut(s)	55, 193, 286, 454
Bst2UI	CCWGG	2 cut(s)	496, 522
Bst4CI	ACNGT	4 cut(s)	242, 257, 413, 584
Bst6I	CTCTTC	3 cut(s)	152, 216, 255
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	4 cut(s)	58, 196, 289, 457
BstMAI	GTCTC	2 cut(s)	115, 499
BstMBI	GATC	4 cut(s)	55, 193, 286, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 517
BstNI	CCWGG	2 cut(s)	496, 522
BstSCI	CCNGG	2 cut(s)	494, 520
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	4 cut(s)	75, 213, 258, 435
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	262, 589
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	16
CspCI	CAANNNNNGTGG	2 cut(s)	135, 170
CviJI	RGCY	7 cut(s)	5, 29, 63, 77, 103, 173, 520
CviKI_1	RGCY	7 cut(s)	5, 29, 63, 77, 103, 173, 520
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	4 cut(s)	57, 195, 288, 456
DpnII	GATC	4 cut(s)	55, 193, 286, 454
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	152, 216, 255
EarI	CTCTTC	3 cut(s)	152, 216, 255
Eco47I	GGWCC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	494, 520
Esp3I	CGTCTC	1 cut(s)	499
FaiI	YATR	1 cut(s)	308
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	263, 389, 499
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	169, 451, 504
Hpy188III	TCNNGA	2 cut(s)	140, 197
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	7 cut(s)	242, 386, 389, 404, 407, 410, 413
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	4 cut(s)	242, 257, 413, 584
HpyCH4V	TGCA	2 cut(s)	37, 191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 517
HpyF3I	CTNAG	1 cut(s)	12
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	55, 193, 286, 454
LguI	GCTCTTC	1 cut(s)	152
LpnPI	CCDG	6 cut(s)	127, 481, 497, 507, 508, 534
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	60
MalI	GATC	4 cut(s)	57, 195, 288, 456
MboI	GATC	4 cut(s)	55, 193, 286, 454
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	5 cut(s)	121, 151, 163, 176, 422
MlyI	GAGTC	3 cut(s)	272, 383, 493
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	2 cut(s)	496, 522
MvaI	CCWGG	2 cut(s)	496, 522
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	43, 517
NdeII	GATC	4 cut(s)	55, 193, 286, 454
NspV	TTCGAA	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	4 cut(s)	216, 417, 432, 438
PfoI	TCCNGGA	1 cut(s)	494
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	3 cut(s)	271, 383, 493
PpsI	GAGTC	3 cut(s)	271, 383, 493
Psp6I	CCWGG	2 cut(s)	494, 520
PspGI	CCWGG	2 cut(s)	494, 520
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	4 cut(s)	55, 193, 286, 454
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	3 cut(s)	272, 383, 493
ScrFI	CCNGG	2 cut(s)	496, 522
SetI	ASST	5 cut(s)	65, 105, 175, 471, 516
SfuI	TTCGAA	1 cut(s)	426
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	3 cut(s)	98, 126, 138
SmoI	CTYRAG	3 cut(s)	98, 126, 138
Sse9I	AATT	5 cut(s)	121, 151, 163, 176, 422
SsiI	CCGC	2 cut(s)	464, 535
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	494, 520
TaaI	ACNGT	4 cut(s)	242, 257, 413, 584
TaqI	TCGA	2 cut(s)	426, 471
TasI	AATT	5 cut(s)	121, 151, 163, 176, 422
TscAI	CASTG	2 cut(s)	262, 589
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	2 cut(s)	261, 375
TspGWI	ACGGA	2 cut(s)	268, 480
TspRI	CASTG	2 cut(s)	262, 589
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	151, 422
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.