Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019886.1

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Forward (+)

4437 .. 5135

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019886.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ctgtctcccttctctcgtggtgttcacagaaccccccaaaaccctaattcatctcgtcgccccattcccccagcactagagcaagtcccttacgcagcttcattcatggccgaaactaaggaccaagaagaagccacattgcgcgcgaagcgcaaacccgatcccagctgcgaagaccaagccgactaccccaacaaatccctcaagcttcaagtctccggcaacaattctcaaggaaaaactcaagaaccacaaaatttgaagagcaattccgaagctgaattacaaggcaatgcagatcccgaagcagaagacgaggaggaatgcggcgacgatgatgaagaagacggtgaagagtctaatgggaaatccgtggtggatcgcaaggggaaggggattgtgagagatgataagggcaaagggatactgatagaagaagaagaagaagatgatgatgaagatggcgaggaggatagcgacgacgactcctccaccgacgacggcggaagcgaattcgaagacggcgacagcgatttatcggacgatcctcttgcggaggtcgatttggacaacattcttccttccaggactcggagacggcaggttcagcctggggtttacatccgcaatgataacaacgcaaaccacaaccacaacaacgatgacgatgacagtgatgatagcgatggtttgagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.54

Weight (kDa)

4.08

Isoelectric Point (pI)

72.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	592
AccII	CGCG	2 cut(s)	144, 146
AciI	CCGC	4 cut(s)	327, 504, 554, 625
AclWI	GGATC	4 cut(s)	155, 293, 387, 539
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	256, 512
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	2 cut(s)	212, 262
AjnI	CCWGG	2 cut(s)	584, 610
AluBI	AGCT	4 cut(s)	98, 168, 208, 278
AluI	AGCT	4 cut(s)	98, 168, 208, 278
Alw26I	GTCTC	3 cut(s)	9, 220, 589
AlwI	GGATC	4 cut(s)	155, 293, 387, 539
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	2 cut(s)	95, 168
ApoI	RAATTY	2 cut(s)	256, 512
AspLEI	GCGC	3 cut(s)	144, 146, 153
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	180, 318, 351, 525
BbvI	GCAGC	2 cut(s)	107, 155
BccI	CCATC	2 cut(s)	455, 680
BceAI	ACGGC	3 cut(s)	517, 538, 614
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	586, 612
BciVI	GTATCC	1 cut(s)	417
BcoDI	GTCTC	3 cut(s)	9, 220, 589
BfaI	CTAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	592
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	96, 169, 328
BlsI	GCNGC	3 cut(s)	97, 170, 329
Bme1390I	CCNGG	2 cut(s)	586, 612
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	2 cut(s)	586, 612
BpiI	GAAGAC	4 cut(s)	180, 318, 351, 525
Bpu14I	TTCGAA	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	188, 216, 228
BsaJI	CCNNGG	2 cut(s)	372, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 473, 500, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse3DI	GCAATG	3 cut(s)	137, 298, 634
BseBI	CCWGG	2 cut(s)	586, 612
BseDI	CCNNGG	2 cut(s)	372, 611
BseGI	GGATG	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	3 cut(s)	137, 298, 634
BsePI	GCGCGC	1 cut(s)	142
BseRI	GAGGAG	3 cut(s)	332, 478, 482
BseXI	GCAGC	2 cut(s)	107, 155
BseYI	CCCAGC	2 cut(s)	70, 164
Bsh1236I	CGCG	2 cut(s)	144, 146
BshFI	GGCC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	3 cut(s)	9, 220, 589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	516
Bsp143I	GATC	4 cut(s)	160, 298, 379, 544
BspACI	CCGC	4 cut(s)	327, 504, 554, 625
BspANI	GGCC	1 cut(s)	110
BspFNI	CGCG	2 cut(s)	144, 146
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	4 cut(s)	155, 293, 387, 539
BspQI	GCTCTTC	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	516
BsrDI	GCAATG	3 cut(s)	137, 298, 634
BssECI	CCNNGG	2 cut(s)	372, 611
BssHII	GCGCGC	1 cut(s)	142
BssMI	GATC	4 cut(s)	160, 298, 379, 544
BssSI	CACGAG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	586, 612
Bst4CI	ACNGT	2 cut(s)	350, 674
Bst6I	CTCTTC	2 cut(s)	257, 348
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	621
BstFNI	CGCG	2 cut(s)	144, 146
BstHHI	GCGC	3 cut(s)	144, 146, 153
BstKTI	GATC	4 cut(s)	163, 301, 382, 547
BstMAI	GTCTC	3 cut(s)	9, 220, 589
BstMBI	GATC	4 cut(s)	160, 298, 379, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 150, 607
BstNI	CCWGG	2 cut(s)	586, 612
BstSCI	CCNGG	2 cut(s)	584, 610
BstUI	CGCG	2 cut(s)	144, 146
BstV1I	GCAGC	2 cut(s)	107, 155
BstV2I	GAAGAC	4 cut(s)	180, 318, 351, 525
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	679
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	3 cut(s)	144, 146, 153
Cfr13I	GGNCC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	8 cut(s)	98, 110, 134, 168, 182, 208, 278, 610
CviKI_1	RGCY	8 cut(s)	98, 110, 134, 168, 182, 208, 278, 610
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	4 cut(s)	162, 300, 381, 546
DpnII	GATC	4 cut(s)	160, 298, 379, 544
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	257, 348
EarI	CTCTTC	2 cut(s)	257, 348
EciI	GGCGGA	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	584, 610
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	96, 169, 328
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	3 cut(s)	96, 169, 328
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	3 cut(s)	143, 145, 152
GluI	GCNGC	3 cut(s)	96, 169, 328
GsaI	CCCAGC	2 cut(s)	74, 168
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	3 cut(s)	144, 146, 153
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	3 cut(s)	142, 144, 151
HinP1I	GCGC	3 cut(s)	142, 144, 151
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	356, 485, 589
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	25, 619
Hpy188I	TCNGA	3 cut(s)	274, 541, 594
Hpy188III	TCNNGA	2 cut(s)	245, 302
Hpy8I	GTNNAC	2 cut(s)	25, 619
Hpy99I	CGWCG	6 cut(s)	60, 335, 482, 485, 500, 503
HpyAV	CCTTC	3 cut(s)	19, 385, 591
HpyCH4III	ACNGT	2 cut(s)	350, 674
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 150, 607
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	3 cut(s)	142, 144, 151
Kzo9I	GATC	4 cut(s)	160, 298, 379, 544
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	84, 178, 232, 571, 587, 597, 598, 624
Lsp1109I	GCAGC	2 cut(s)	107, 155
MaeI	CTAG	1 cut(s)	77
MalI	GATC	4 cut(s)	162, 300, 381, 546
MboI	GATC	4 cut(s)	160, 298, 379, 544
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	6 cut(s)	46, 226, 256, 268, 281, 512
MlyI	GAGTC	3 cut(s)	365, 479, 583
MnlI	CCTC	8 cut(s)	212, 310, 313, 460, 463, 499, 550, 558
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	586, 612
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	2 cut(s)	586, 612
MvnI	CGCG	2 cut(s)	144, 146
MwoI	GCNNNNNNNGC	3 cut(s)	148, 150, 607
NdeII	GATC	4 cut(s)	160, 298, 379, 544
NlaIII	CATG	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	516
PauI	GCGCGC	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	3 cut(s)	507, 522, 528
PctI	GAATGC	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	3 cut(s)	97, 170, 329
PleI	GAGTC	3 cut(s)	364, 479, 583
PpsI	GAGTC	3 cut(s)	364, 479, 583
Psp6I	CCWGG	2 cut(s)	584, 610
PspFI	CCCAGC	2 cut(s)	70, 164
PspGI	CCWGG	2 cut(s)	584, 610
PspPI	GGNCC	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	298
PteI	GCGCGC	1 cut(s)	142
PvuII	CAGCTG	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	3 cut(s)	96, 169, 328
Sau3AI	GATC	4 cut(s)	160, 298, 379, 544
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	3 cut(s)	365, 479, 583
ScrFI	CCNGG	2 cut(s)	586, 612
SetI	ASST	6 cut(s)	100, 170, 210, 280, 561, 606
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	121
SmlI	CTYRAG	3 cut(s)	203, 231, 243
SmoI	CTYRAG	3 cut(s)	203, 231, 243
Sse9I	AATT	6 cut(s)	46, 226, 256, 268, 281, 512
SsiI	CCGC	4 cut(s)	327, 504, 554, 625
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	584, 610
TaaI	ACNGT	2 cut(s)	350, 674
TaqI	TCGA	2 cut(s)	516, 561
TasI	AATT	6 cut(s)	46, 226, 256, 268, 281, 512
TauI	GCSGC	1 cut(s)	330
TscAI	CASTG	1 cut(s)	679
TseI	GCWGC	2 cut(s)	95, 168
TspDTI	ATGAA	5 cut(s)	39, 90, 94, 354, 471
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	2 cut(s)	256, 512
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.