Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Reverse (-)

27042097 .. 27045658

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCCGAAACTAATAACCTAGGCGAACCCACATTTCCCGTGAAGCGTAAACCCGATCTCAGCTGCGAGGACCAGGCCGACTACCCTAAGAAAACCCATAAGCTTGAAGTTTCTGATATTAGTTCGTCGCTTGCTGAAGGAAAAACTCAAGACCCAGAAAATTTCGACCAGAATTCCTCGGTGGCCGAAGAGATAAACGATAAATTTGAAGCCAATGCAGACCCTGAAGACGAAGAAGATTTCGTAGAAGACGACGACGAAGATGAAGACGGTGAAAAGTCTAATGGGAAGGCTGAGGTGGATCGCAAGGGAAAGGGGATTATGAGAGATGACAAGGGCAAAGGGAAACTGATAGAAGAAGATGACGATGACAGTGACGACGATTCAAGCGATGGTGGTAGCGAATTCGAAGATGGCGATAGTGATTTATCGGATGATCCTCTTGCGGAGGTCGATTTGCATAACATTCTTCCTTCGAGGACTCGGAGACGGCAGGTTCAGCCTGGGGTTTACATGGCTAATGATATTGGAAACGACGAAGAAGATGATAGTGATGACAGCGATACTCTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.14

Weight (kDa)

4.05

Isoelectric Point (pI)

55.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	309, 431
AcoI	YGGCCR	2 cut(s)	3, 183
AcsI	RAATTY	4 cut(s)	160, 172, 203, 404
AcuI	CTGAAG	2 cut(s)	156, 246
AgsI	TTSAA	3 cut(s)	107, 209, 387
AjnI	CCWGG	2 cut(s)	72, 502
AluBI	AGCT	2 cut(s)	63, 103
AluI	AGCT	2 cut(s)	63, 103
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	2 cut(s)	309, 431
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	3, 75, 183
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	4 cut(s)	160, 172, 203, 404
AspA2I	CCTAGG	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	284
AsuII	TTCGAA	1 cut(s)	408
AvaII	GGWCC	1 cut(s)	70
AvrII	CCTAGG	1 cut(s)	19
BbsI	GAAGAC	3 cut(s)	234, 255, 273
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	386, 407
BceAI	ACGGC	1 cut(s)	506
BciT130I	CCWGG	2 cut(s)	74, 504
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	64
BlnI	CCTAGG	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	74, 504
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	74, 504
BpiI	GAAGAC	3 cut(s)	234, 255, 273
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	19, 177, 503
BseBI	CCWGG	2 cut(s)	74, 504
BseDI	CCNNGG	3 cut(s)	19, 177, 503
BseGI	GGATG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	73, 285, 560
BseXI	GCAGC	1 cut(s)	50
BshFI	GGCC	3 cut(s)	5, 77, 185
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsnI	GGCC	3 cut(s)	5, 77, 185
Bsp119I	TTCGAA	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	55, 301, 436
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	3 cut(s)	5, 77, 185
BspCNI	CTCAG	3 cut(s)	72, 286, 561
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	309, 431
BspT104I	TTCGAA	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	19, 177, 503
BssMI	GATC	3 cut(s)	55, 301, 436
BssT1I	CCWWGG	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	74, 504
Bst4CI	ACNGT	2 cut(s)	272, 374
Bst6I	CTCTTC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	408
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	59, 87, 294, 569
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	3 cut(s)	58, 304, 439
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	55, 301, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	2 cut(s)	74, 504
BstSCI	CCNGG	2 cut(s)	72, 502
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	3 cut(s)	234, 255, 273
BsuRI	GGCC	3 cut(s)	5, 77, 185
BtgZI	GCGATG	1 cut(s)	405
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	1 cut(s)	514
CviJI	RGCY	9 cut(s)	5, 63, 77, 103, 185, 212, 293, 502, 518
CviKI_1	RGCY	9 cut(s)	5, 63, 77, 103, 185, 212, 293, 502, 518
DdeI	CTNAG	4 cut(s)	59, 87, 294, 569
DpnI	GATC	3 cut(s)	57, 303, 438
DpnII	GATC	3 cut(s)	55, 301, 436
EaeI	YGGCCR	2 cut(s)	3, 183
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	156, 246
EcoRI	GAATTC	2 cut(s)	172, 404
EcoRII	CCWGG	2 cut(s)	72, 502
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	1 cut(s)	517
FaiI	YATR	4 cut(s)	99, 323, 462, 515
FatI	CATG	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	3 cut(s)	5, 77, 185
Hin1II	CATG	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	2 cut(s)	383, 481
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	50, 511
Hpy188I	TCNGA	4 cut(s)	115, 433, 486, 570
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	50, 511
Hpy99I	CGWCG	5 cut(s)	130, 257, 260, 383, 539
HpyAV	CCTTC	3 cut(s)	131, 283, 483
HpyCH4III	ACNGT	2 cut(s)	272, 374
HpyCH4V	TGCA	2 cut(s)	218, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	4 cut(s)	59, 87, 294, 569
Hsp92II	CATG	1 cut(s)	517
Kzo9I	GATC	3 cut(s)	55, 301, 436
LpnPI	CCDG	8 cut(s)	59, 86, 168, 182, 237, 479, 489, 516
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	57, 303, 438
MboI	GATC	3 cut(s)	55, 301, 436
MluCI	AATT	4 cut(s)	160, 172, 203, 404
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	61, 187, 289, 442, 450, 471
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	74, 504
MvaI	CCWGG	2 cut(s)	74, 504
MwoI	GCNNNNNNNGC	1 cut(s)	499
NdeII	GATC	3 cut(s)	55, 301, 436
NlaIII	CATG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 387, 414
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
Psp6I	CCWGG	2 cut(s)	72, 502
PspGI	CCWGG	2 cut(s)	72, 502
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	63
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	3 cut(s)	55, 301, 436
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	2 cut(s)	74, 504
SetI	ASST	6 cut(s)	21, 65, 105, 300, 453, 498
SfuI	TTCGAA	1 cut(s)	408
SinI	GGWCC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	4 cut(s)	160, 172, 203, 404
SsiI	CCGC	1 cut(s)	446
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	72, 502
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	272, 374
TaqI	TCGA	4 cut(s)	165, 408, 453, 476
TasI	AATT	4 cut(s)	160, 172, 203, 404
TfiI	GAWTC	1 cut(s)	383
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	4 cut(s)	160, 172, 203, 404
XmaJI	CCTAGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.