Rmu_sc0012068.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012068.1
OG0005343
Physical Location & Seq
Reverse (-)
15944 .. 18481
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012068.1_g000005.1.cds

Sequence Viewer

Length: 430 bp
ctgcgaggaccaagccgactacctcaacaaatcccacaagcttcaagtctctggcaacaattctcaaggaaaaactcaagaaccagaaaatttgaagagcaattttgaagctgaattacaaggcaatgcagatcgcgaagcagaagacgaggaggacgaagaggaggaatacgacaatgaagaagaagaagaagaaggtgaattagactcatccgtggtggatcacaaggggaaggggattatgagagatgataagggcaaagagatattgatagaaaatgaagatgacgaggaggatagcgacgacggtggaagcgaattcgaagacgacgacaaaaatttgttcgacgatcctcttgcggagatcgatttggacaacattcttccttccaagactcgaagtcgacaggttcaacctgatgtaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.14

Weight (kDa)

4.05

Isoelectric Point (pI)

71.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 404
AccII CGCG 1 cut(s) 136
AciI CCGC 1 cut(s) 360
AclWI GGATC 2 cut(s) 229, 345
AcsI RAATTY 3 cut(s) 89, 318, 338
AgsI TTSAA 4 cut(s) 45, 95, 108, 414
AhdI GACNNNNNGTC 1 cut(s) 400
AluBI AGCT 2 cut(s) 41, 111
AluI AGCT 2 cut(s) 41, 111
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 229, 345
ApoI RAATTY 3 cut(s) 89, 318, 338
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 2 cut(s) 151, 331
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BcoDI GTCTC 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 8
BmeRI GACNNNNNGTC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 8
BpiI GAAGAC 2 cut(s) 151, 331
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 49, 61
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 131
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 131
BseRI GAGGAG 3 cut(s) 165, 177, 306
Bsh1236I CGCG 1 cut(s) 136
BshVI ATCGAT 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 53
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 4 cut(s) 131, 221, 350, 364
Bsp68I TCGCGA 1 cut(s) 136
BspACI CCGC 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 1 cut(s) 136
BspPI GGATC 2 cut(s) 229, 345
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 4 cut(s) 131, 221, 350, 364
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 90, 154
BstBI TTCGAA 1 cut(s) 322
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 136
BstKTI GATC 4 cut(s) 134, 224, 353, 367
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 4 cut(s) 131, 221, 350, 364
BstUI CGCG 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 151, 331
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 210
BtuMI TCGCGA 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 367
CviJI RGCY 3 cut(s) 15, 41, 111
CviKI_1 RGCY 3 cut(s) 15, 41, 111
DpnI GATC 4 cut(s) 133, 223, 352, 366
DpnII GATC 4 cut(s) 131, 221, 350, 364
DriI GACNNNNNGTC 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 90, 154
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 2 cut(s) 90, 154
Eco47I GGWCC 1 cut(s) 8
EcoRI GAATTC 1 cut(s) 318
FaiI YATR 1 cut(s) 243
FblI GTMKAC 1 cut(s) 404
FokI GGATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 2 cut(s) 207, 395
HphI GGTGA 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 405, 425
Hpy188III TCNNGA 2 cut(s) 78, 135
Hpy8I GTNNAC 2 cut(s) 405, 425
Hpy99I CGWCG 4 cut(s) 306, 309, 333, 351
HpyAV CCTTC 3 cut(s) 189, 227, 397
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 129
Kzo9I GATC 4 cut(s) 131, 221, 350, 364
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 37, 97, 393
MalI GATC 4 cut(s) 133, 223, 352, 366
MboI GATC 4 cut(s) 131, 221, 350, 364
MluCI AATT 7 cut(s) 59, 89, 101, 114, 201, 318, 338
MlyI GAGTC 2 cut(s) 201, 389
MnlI CCTC 8 cut(s) 33, 143, 146, 155, 158, 284, 287, 364
MvnI CGCG 1 cut(s) 136
NdeII GATC 4 cut(s) 131, 221, 350, 364
NruI TCGCGA 1 cut(s) 136
NspV TTCGAA 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 3 cut(s) 154, 313, 328
PleI GAGTC 2 cut(s) 201, 389
PpsI GAGTC 2 cut(s) 201, 389
PspPI GGNCC 1 cut(s) 8
RruI TCGCGA 1 cut(s) 136
SalI GTCGAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 90
Sau3AI GATC 4 cut(s) 131, 221, 350, 364
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 201, 389
SetI ASST 6 cut(s) 25, 43, 113, 200, 412, 419
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 2 cut(s) 64, 76
SmoI CTYRAG 2 cut(s) 64, 76
Sse9I AATT 7 cut(s) 59, 89, 101, 114, 201, 318, 338
SsiI CCGC 1 cut(s) 360
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 5 cut(s) 322, 346, 367, 398, 404
TasI AATT 7 cut(s) 59, 89, 101, 114, 201, 318, 338
TspDTI ATGAA 2 cut(s) 193, 295
TspGWI ACGGA 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 3 cut(s) 89, 318, 338
XmiI GTMKAC 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.