Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005343

Physical Location & Seq

Genomic Coordinates Forward (+)

386552 .. 387118

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1004900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTGAGACTAAGGACCAAGGCGAACTCACATTTCCCGCGAAGCGCAAACCCGATCTCAGCTGCGGCGACCAGCCCGACTGCCCCAACAAAACCCAGAAGCTTGAAGTTCCCGATCACCGTCCGTTGGCTGCCGAGCCACAAACTCAAAACCCAGAAAATTTCCACAACAATTCCTCCGCTGGCGAAGAGAAAATCTATAAGTTTGAAGCCAGTGCTGACCTCGAAGACGAAGACGAGGAGGAAGAGTACGACGCAGAAAACGACTGTGAAAAGTCTAATGGGAAGGCGGAGGTGAATCCCAAGGGGAAGGGGATTATGAGAGATGACAAGGGCAAAGGGAAACTGGTAGAAGAAGATGACGACGACAGCGACGATGATTCGAGCGACGGCGGAAGCGAATTTGAAGACGGAGACAGTGATTTGTCGGATGATCCTCTTGCGGAGGTCGATTTGGATAACATTCTTCCTTCGAGGACTCGAAGACGGCAGGTGCAGCCAGGGGTTTACATTGCTAATGACATTGGAAACGAAGAAGAAGATGACAGTGATGACAGCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.83

Weight (kDa)

4.05

Isoelectric Point (pI)

54.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005343)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12830
fragaria_vesca	FvH4_6g54150
malus_domestica	MD09G1004900.v1.1 MD17G1008900.v1.1
prunus_persica	Prupe.3G311900_v2.0.a1 Prupe.3G311900_v2.0.a1
pyrus_communis	pycom111g00360 pycom17g00380
rosa_chinensis	RchiOBHm_Chr2g0176321
rosa_laevigata	RLG00000022403 RLG00000029963
rosa_multiflora	Rmu_co8090046.1_g000001 Rmu_sc0001118.1_g000005 Rmu_sc0002535.1_g000017 Rmu_sc0012068.1_g000005 Rmu_sc0019886.1_g000002 Rmu_sc0027060.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076570 Rroxscaffold_7G00183620
rosa_rugosa	Rorug02G0593200
rosa_samantha	Rh1CG085100 Rh2AG671700 Rh2BG683200 Rh2CG645800 Rh2DG696700 Rh6AG282600 Rh6CG285300 Rh6DG278400
rosa_wichuraiana	Rw2G055080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	481
AccII	CGCG	1 cut(s)	41
AciI	CCGC	6 cut(s)	39, 66, 180, 290, 393, 443
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	2 cut(s)	160, 401
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	107, 209, 407
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	63, 103
AluI	AGCT	2 cut(s)	63, 103
Alw26I	GTCTC	2 cut(s)	2, 408
AlwI	GGATC	1 cut(s)	428
ApeKI	GCWGC	3 cut(s)	63, 131, 496
ApoI	RAATTY	2 cut(s)	160, 401
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	110, 307
AvaII	GGWCC	1 cut(s)	16
BbsI	GAAGAC	4 cut(s)	234, 240, 414, 490
BbvI	GCAGC	3 cut(s)	50, 118, 508
BceAI	ACGGC	2 cut(s)	406, 503
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	2, 408
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	4 cut(s)	64, 67, 132, 497
BlsI	GCNGC	4 cut(s)	65, 68, 133, 498
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	501
BpiI	GAAGAC	4 cut(s)	234, 240, 414, 490
BsaJI	CCNNGG	3 cut(s)	19, 303, 500
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	213, 351
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	19, 303, 500
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	213, 351
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	50, 118, 508
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	2, 408
Bsp143I	GATC	3 cut(s)	55, 115, 433
BspACI	CCGC	6 cut(s)	39, 66, 180, 290, 393, 443
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	213, 351
BssECI	CCNNGG	3 cut(s)	19, 303, 500
BssMI	GATC	3 cut(s)	55, 115, 433
BssT1I	CCWWGG	2 cut(s)	19, 303
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	4 cut(s)	122, 269, 419, 548
Bst6I	CTCTTC	2 cut(s)	183, 240
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	3 cut(s)	6, 12, 59
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	3 cut(s)	58, 118, 436
BstMAI	GTCTC	2 cut(s)	2, 408
BstMBI	GATC	3 cut(s)	55, 115, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	50, 118, 508
BstV2I	GAAGAC	4 cut(s)	234, 240, 414, 490
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	220, 424, 553
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	16
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	250
CviJI	RGCY	8 cut(s)	5, 63, 76, 103, 131, 139, 212, 499
CviKI_1	RGCY	8 cut(s)	5, 63, 76, 103, 131, 139, 212, 499
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	3 cut(s)	6, 12, 59
DpnI	GATC	3 cut(s)	57, 117, 435
DpnII	GATC	3 cut(s)	55, 115, 433
Eam1104I	CTCTTC	2 cut(s)	183, 240
EarI	CTCTTC	2 cut(s)	183, 240
EciI	GGCGGA	2 cut(s)	305, 408
Eco130I	CCWWGG	2 cut(s)	19, 303
Eco47I	GGWCC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	19, 303
ErhI	CCWWGG	2 cut(s)	19, 303
FaiI	YATR	2 cut(s)	201, 320
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	64, 67, 132, 497
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	4 cut(s)	64, 67, 132, 497
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	4 cut(s)	64, 67, 132, 497
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	48
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	101
HinfI	GANTC	3 cut(s)	298, 380, 478
HphI	GGTGA	2 cut(s)	110, 307
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	4 cut(s)	257, 368, 377, 392
HpyAV	CCTTC	3 cut(s)	280, 304, 480
HpyCH4III	ACNGT	4 cut(s)	122, 269, 419, 548
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	3 cut(s)	6, 12, 59
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	55, 115, 433
LpnPI	CCDG	9 cut(s)	86, 110, 168, 168, 226, 332, 476, 486, 513
Lsp1109I	GCAGC	3 cut(s)	50, 118, 508
MalI	GATC	3 cut(s)	57, 117, 435
MboI	GATC	3 cut(s)	55, 115, 433
MluCI	AATT	3 cut(s)	160, 172, 401
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	187, 232, 233, 235, 286, 439, 447, 468
MspA1I	CMGCKG	2 cut(s)	63, 182
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	496
NdeII	GATC	3 cut(s)	55, 115, 433
NmeAIII	GCCGAG	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	4 cut(s)	261, 369, 372, 396
PfeI	GAWTC	2 cut(s)	298, 380
PkrI	GCNGC	4 cut(s)	65, 68, 133, 498
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SatI	GCNGC	4 cut(s)	64, 67, 132, 497
Sau3AI	GATC	3 cut(s)	55, 115, 433
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	501
SetI	ASST	6 cut(s)	65, 105, 225, 297, 450, 495
SinI	GGWCC	1 cut(s)	16
Sse9I	AATT	3 cut(s)	160, 172, 401
SsiI	CCGC	6 cut(s)	39, 66, 180, 290, 393, 443
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	2 cut(s)	19, 303
TaaI	ACNGT	4 cut(s)	122, 269, 419, 548
TaqI	TCGA	5 cut(s)	225, 383, 450, 473, 481
TasI	AATT	3 cut(s)	160, 172, 401
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	298, 380
TscAI	CASTG	3 cut(s)	220, 424, 553
TseI	GCWGC	3 cut(s)	63, 131, 496
TspGWI	ACGGA	2 cut(s)	114, 426
TspRI	CASTG	3 cut(s)	220, 424, 553
VpaK11BI	GGWCC	1 cut(s)	16
XapI	RAATTY	2 cut(s)	160, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.