Rorug02G0593200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
71509321 .. 71512410
3090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0593200.1

Sequence Viewer

Length: 1233 bp
ATGGTGGCTCAGTCTCTGCTGCACTCTGCCTCTTTGGCCGGAATCCGCTGCTTCACTCCCCCCACAGATAAATGGAGTAACATTTGCAGATTGATTTCTTCACATAATAAACACCCAATGGAAACCAAGGCCACCCAGAGTTCATCAGTTGCTTCTTCTACGACGTCGTTTGGGAGCTCGAAGAAGACGGTGTGGGTTTGGACGGAGAGCAAGCAGGTCATGACGGCCGCCGTGGAGAGAGGCTGGAACACCTTCCTGTTTCAGAGTCAGAAACTCGCCGATGACTGGTCTTCAATTGCGTTGATAGATCCTCTTTTGATCAAAGAGGGAGGGATTTTCGATAGCGAGAACTCGAGAGTTGCTACAGTTGTTGAGGTTTCCAATCCCAAAGAGTTGGAAGAGCTTCAACCCGAAAACGGGGTGGCTGAGAATGTTGTCGTTGATTTGCTAGATTGGCAGGTGATACCGGCGGAGAATATAGTTGCAGCATTTCAAGGGAGTCAGAAAACAGTGTTTGCCGTCTCGAAAACCCCTGTCGAAGCACAAGTCTTCTTTGAGGCTCTCGAGCATGGTCTGGGTGGAGTTGTTTTGAAAGTTGAGGATGTTCAAGCAGTTCTTGACCTAAAGGACTATTTTGACAGAAGAGACGAAGTGGGCAACATATTGAGTTTGACCAAAGCCATTGTAACTGGAGTCCAAGTAGCTGGAATGGGGGATCGGGTTTGTGTTGATCTCTGTAGTCTCATGAGACCTGGTGAAGGACTGCTTGTTGGATCCTTTGCCAGAGGACTATTCCTGGTTCATTCAGAATGCTTGGAGTCAAATTACATCGCCAGCAGACCTTTCCGTGTCAATGCGGGACCTGTACATGCCTATGTTGCTGTTCCAGGAGGAAAAACAAGCTACCTCTCGGAGTTGAAAGCAGGAAAAGAGGTGATTCTGGTTGATCAGAAAGGTCGTCAACGACCAGCAATTGTTGGACGTGTAAAGATAGAGACGAGACCACTAATCCTTGTGGAGGCAAAGAGGAGTTTGGATGATCAAACAATCTACAGTATCCTTGTACAAAATGCAGAAACAGTTGCCTTAGTGTGTCCCAAAAAAGAAAATGAAGGGCAAAAAACTGCAATCCCTGTGACTTCACTTAAAGTCGGAGATGAAATTATGCTCAGATTACAGGGAGGAGCCCGGCATACGGGAATTGAAATTCAAGAATTCATTGTGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

410

Amino Acids

44.71

Weight (kDa)

5.77

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHQS PF01959 61 - 212 8.6e-45 3-dehydroquinate synthase II N-terminal domain
DHQS_2nd PF26558 227 - 410 1.2e-75 3-dehydroquinate synthase II C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
AatII GACGTC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 205, 448
AciI CCGC 4 cut(s) 46, 228, 470, 857
AclWI GGATC 4 cut(s) 302, 723, 768, 781
AcoI YGGCCR 2 cut(s) 36, 225
AcsI RAATTY 2 cut(s) 1206, 1214
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 867, 1065
AfiI CCNNNNNNNGG 6 cut(s) 285, 416, 417, 758, 1018, 1195
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 8 cut(s) 294, 407, 494, 592, 608, 919, 1205, 1211
AjiI CACGTC 1 cut(s) 983
AjnI CCWGG 3 cut(s) 751, 795, 886
AluBI AGCT 4 cut(s) 177, 403, 704, 903
AluI AGCT 4 cut(s) 177, 403, 704, 903
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 7 cut(s) 18, 526, 639, 742, 746, 989, 994
AlwI GGATC 4 cut(s) 302, 723, 768, 781
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 2 cut(s) 352, 563
AoxI GGCC 3 cut(s) 36, 129, 225
ApeKI GCWGC 3 cut(s) 19, 48, 485
ApoI RAATTY 2 cut(s) 1206, 1214
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
Asp700I GAANNNNTTC 2 cut(s) 251, 402
AspS9I GGNCC 1 cut(s) 860
AsuC2I CCSGG 1 cut(s) 1189
AsuHPI GGTGA 3 cut(s) 472, 767, 946
AvaI CYCGRG 2 cut(s) 352, 563
AvaII GGWCC 1 cut(s) 860
BamHI GGATCC 1 cut(s) 773
BanII GRGCYC 2 cut(s) 179, 1189
BbsI GAAGAC 3 cut(s) 191, 282, 541
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 6, 35, 497
BceAI ACGGC 3 cut(s) 215, 240, 503
BciT130I CCWGG 3 cut(s) 753, 797, 888
BciVI GTATCC 1 cut(s) 1067
BclI TGATCA 3 cut(s) 318, 946, 1039
BcnI CCSGG 1 cut(s) 1189
BcoDI GTCTC 7 cut(s) 18, 526, 639, 742, 746, 989, 994
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 3 cut(s) 363, 736, 1051
BfuAI ACCTGC 2 cut(s) 205, 448
BfuI GTATCC 1 cut(s) 1067
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 4 cut(s) 20, 49, 228, 486
BlsI GCNGC 4 cut(s) 21, 50, 229, 487
Bme1390I CCNGG 4 cut(s) 753, 797, 888, 1189
Bme18I GGWCC 1 cut(s) 860
BmeT110I CYCGRG 2 cut(s) 352, 563
BmgBI CACGTC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 860
BmiI GGNNCC 3 cut(s) 775, 861, 1186
BmrFI CCNGG 4 cut(s) 753, 797, 888, 1189
BpiI GAAGAC 3 cut(s) 191, 282, 541
BpmI CTGGAG 1 cut(s) 711
BpuMI CCSGG 1 cut(s) 1189
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 2 cut(s) 742, 994
BsaJI CCNNGG 2 cut(s) 126, 231
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 6 cut(s) 285, 416, 417, 758, 1018, 1195
Bse118I RCCGGY 1 cut(s) 466
Bse1I ACTGG 2 cut(s) 290, 694
BseBI CCWGG 3 cut(s) 753, 797, 888
BseDI CCNNGG 2 cut(s) 126, 231
BseGI GGATG 2 cut(s) 607, 1042
BseLI CCNNNNNNNGG 6 cut(s) 285, 416, 417, 758, 1018, 1195
BseMII CTCAG 3 cut(s) 23, 417, 1183
BseNI ACTGG 2 cut(s) 290, 694
BseRI GAGGAG 2 cut(s) 1042, 1197
BseX3I CGGCCG 1 cut(s) 225
BseXI GCAGC 3 cut(s) 6, 35, 497
BsgI GTGCAG 1 cut(s) 5
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 3 cut(s) 38, 131, 227
BsiEI CGRYCG 1 cut(s) 228
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 352, 563
BsiSI CCGG 3 cut(s) 39, 467, 1189
BslFI GGGAC 2 cut(s) 873, 1080
BslI CCNNNNNNNGG 6 cut(s) 285, 416, 417, 758, 1018, 1195
BsmAI GTCTC 7 cut(s) 18, 526, 639, 742, 746, 989, 994
BsmBI CGTCTC 3 cut(s) 526, 639, 989
BsmFI GGGAC 2 cut(s) 873, 1080
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 3 cut(s) 38, 131, 227
Bso31I GGTCTC 2 cut(s) 742, 994
BsoBI CYCGRG 2 cut(s) 352, 563
Bsp1286I GDGCHC 2 cut(s) 179, 1189
Bsp1407I TGTACA 2 cut(s) 865, 1063
Bsp143I GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
BspACI CCGC 4 cut(s) 46, 228, 470, 857
BspANI GGCC 3 cut(s) 38, 131, 227
BspCNI CTCAG 3 cut(s) 22, 418, 1182
BspHI TCATGA 2 cut(s) 219, 744
BspLI GGNNCC 3 cut(s) 775, 861, 1186
BspMI ACCTGC 2 cut(s) 205, 448
BspPI GGATC 4 cut(s) 302, 723, 768, 781
BspQI GCTCTTC 1 cut(s) 393
BspTNI GGTCTC 2 cut(s) 742, 994
BsrFI RCCGGY 1 cut(s) 466
BsrGI TGTACA 2 cut(s) 865, 1063
BsrI ACTGG 2 cut(s) 290, 694
BssAI RCCGGY 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 126, 231
BssMI GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 3 cut(s) 753, 797, 888
Bst4CI ACNGT 5 cut(s) 190, 367, 511, 1055, 1081
Bst6I CTCTTC 2 cut(s) 393, 637
BstACI GRCGYC 1 cut(s) 164
BstAUI TGTACA 2 cut(s) 865, 1063
BstC8I GCNNGC 2 cut(s) 212, 835
BstDEI CTNAG 4 cut(s) 9, 426, 1087, 1169
BstDSI CCRYGG 1 cut(s) 231
BstENI CCTNNNNNAGG 2 cut(s) 756, 1016
BstF5I GGATG 2 cut(s) 607, 1042
BstKTI GATC 7 cut(s) 310, 321, 718, 733, 776, 949, 1042
BstMAI GTCTC 7 cut(s) 18, 526, 639, 742, 746, 989, 994
BstMBI GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
BstMCI CGRYCG 1 cut(s) 228
BstMWI GCNNNNNNNGC 3 cut(s) 35, 454, 878
BstNI CCWGG 3 cut(s) 753, 797, 888
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 4 cut(s) 751, 795, 886, 1187
BstSFI CTRYAG 3 cut(s) 363, 736, 1051
BstV1I GCAGC 3 cut(s) 6, 35, 497
BstV2I GAAGAC 3 cut(s) 191, 282, 541
BstX2I RGATCY 2 cut(s) 307, 773
BstXI CCANNNNNNTGG 2 cut(s) 394, 704
BstYI RGATCY 2 cut(s) 307, 773
BstZI CGGCCG 1 cut(s) 225
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 3 cut(s) 38, 131, 227
BtgI CCRYGG 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 814
BtrI CACGTC 1 cut(s) 983
BtsCI GGATG 2 cut(s) 607, 1042
BtsIMutI CAGTG 1 cut(s) 516
BveI ACCTGC 2 cut(s) 205, 448
Cac8I GCNNGC 2 cut(s) 212, 835
CaiI CAGNNNCTG 1 cut(s) 16
CciI TCATGA 2 cut(s) 219, 744
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 860
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 2 cut(s) 866, 1064
CviAII CATG 4 cut(s) 220, 569, 745, 869
CviQI GTAC 2 cut(s) 866, 1064
DdeI CTNAG 4 cut(s) 9, 426, 1087, 1169
DpnI GATC 7 cut(s) 309, 320, 717, 732, 775, 948, 1041
DpnII GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
EaeI YGGCCR 2 cut(s) 36, 225
EagI CGGCCG 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 393, 637
EarI CTCTTC 2 cut(s) 393, 637
EciI GGCGGA 1 cut(s) 485
Ecl136II GAGCTC 1 cut(s) 177
EclXI CGGCCG 1 cut(s) 225
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 2 cut(s) 179, 1189
Eco31I GGTCTC 2 cut(s) 742, 994
Eco47I GGWCC 1 cut(s) 860
Eco52I CGGCCG 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 352, 563
EcoICRI GAGCTC 1 cut(s) 177
EcoNI CCTNNNNNAGG 2 cut(s) 756, 1016
EcoO109I RGGNCCY 1 cut(s) 860
EcoRI GAATTC 1 cut(s) 1214
EcoRII CCWGG 3 cut(s) 751, 795, 886
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 2 cut(s) 179, 1189
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 3 cut(s) 526, 639, 989
FaeI CATG 4 cut(s) 223, 572, 748, 872
FalI AAGNNNNNCTT 4 cut(s) 600, 632, 750, 782
FaqI GGGAC 2 cut(s) 873, 1080
FatI CATG 4 cut(s) 219, 568, 744, 868
FauI CCCGC 1 cut(s) 850
FbaI TGATCA 3 cut(s) 318, 946, 1039
Fnu4HI GCNGC 4 cut(s) 20, 49, 228, 486
FokI GGATG 2 cut(s) 614, 1049
FriOI GRGCYC 2 cut(s) 179, 1189
Fsp4HI GCNGC 4 cut(s) 20, 49, 228, 486
FspBI CTAG 1 cut(s) 449
GluI GCNGC 4 cut(s) 20, 49, 228, 486
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 3 cut(s) 38, 131, 227
HapII CCGG 3 cut(s) 39, 467, 1189
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 4 cut(s) 223, 572, 748, 872
HincII GTYRAC 1 cut(s) 962
HindII GTYRAC 1 cut(s) 962
HinfI GANTC 6 cut(s) 42, 265, 499, 693, 818, 937
HpaII CCGG 3 cut(s) 39, 467, 1189
HphI GGTGA 3 cut(s) 472, 767, 946
Hpy166II GTNNAC 1 cut(s) 962
Hpy188I TCNGA 8 cut(s) 264, 270, 504, 808, 913, 951, 1154, 1172
Hpy188III TCNNGA 7 cut(s) 220, 354, 523, 563, 617, 745, 1211
Hpy8I GTNNAC 1 cut(s) 962
Hpy99I CGWCG 2 cut(s) 166, 169
HpyAV CCTTC 3 cut(s) 262, 752, 1106
HpyCH4III ACNGT 5 cut(s) 190, 367, 511, 1055, 1081
HpyCH4IV ACGT 2 cut(s) 164, 982
HpyCH4V TGCA 5 cut(s) 22, 87, 485, 1073, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 454, 878
HpyF3I CTNAG 4 cut(s) 9, 426, 1087, 1169
HpySE526I ACGT 2 cut(s) 164, 982
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 4 cut(s) 223, 572, 748, 872
Ksp22I TGATCA 3 cut(s) 318, 946, 1039
Kzo9I GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 174, 1184
Lsp1109I GCAGC 3 cut(s) 6, 35, 497
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 1 cut(s) 449
MaeII ACGT 2 cut(s) 164, 982
MaeIII GTNAC 3 cut(s) 77, 685, 1135
MalI GATC 7 cut(s) 309, 320, 717, 732, 775, 948, 1041
MboI GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
MboII GAAGA 8 cut(s) 90, 147, 193, 196, 282, 410, 541, 654
MfeI CAATTG 2 cut(s) 294, 972
MflI RGATCY 2 cut(s) 307, 773
MhlI GDGCHC 2 cut(s) 179, 1189
MluCI AATT 7 cut(s) 294, 823, 972, 1161, 1200, 1206, 1214
MlyI GAGTC 4 cut(s) 274, 508, 702, 827
MmeI TCCRAC 4 cut(s) 375, 751, 958, 1132
MroXI GAANNNNTTC 2 cut(s) 251, 402
MseI TTAA 1 cut(s) 1146
MslI CAYNNNNRTG 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 3 cut(s) 39, 467, 1189
MspR9I CCNGG 4 cut(s) 753, 797, 888, 1189
MunI CAATTG 2 cut(s) 294, 972
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 3 cut(s) 753, 797, 888
MwoI GCNNNNNNNGC 3 cut(s) 35, 454, 878
NciI CCSGG 1 cut(s) 1189
NdeII GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
NlaIII CATG 4 cut(s) 223, 572, 748, 872
NlaIV GGNNCC 3 cut(s) 775, 861, 1186
NmuCI GTSAC 1 cut(s) 1135
NspI RCATGY 1 cut(s) 872
PaeR7I CTCGAG 2 cut(s) 352, 563
PagI TCATGA 2 cut(s) 219, 744
PaqCI CACCTGC 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 393
PctI GAATGC 1 cut(s) 815
PdmI GAANNNNTTC 2 cut(s) 251, 402
PfeI GAWTC 2 cut(s) 42, 937
PfoI TCCNGGA 1 cut(s) 886
PkrI GCNGC 4 cut(s) 21, 50, 229, 487
PleI GAGTC 4 cut(s) 273, 507, 701, 826
PpsI GAGTC 4 cut(s) 273, 507, 701, 826
PpuMI RGGWCCY 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 3 cut(s) 751, 795, 886
PspGI CCWGG 3 cut(s) 751, 795, 886
PspN4I GGNNCC 3 cut(s) 775, 861, 1186
PspPI GGNCC 1 cut(s) 860
PspPPI RGGWCCY 1 cut(s) 860
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 307, 773
RsaI GTAC 2 cut(s) 867, 1065
RsaNI GTAC 2 cut(s) 866, 1064
RseI CAYNNNNRTG 1 cut(s) 873
SacI GAGCTC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 1146
SatI GCNGC 4 cut(s) 20, 49, 228, 486
Sau3AI GATC 7 cut(s) 307, 318, 715, 730, 773, 946, 1039
Sau96I GGNCC 1 cut(s) 860
SchI GAGTC 4 cut(s) 274, 508, 702, 827
ScrFI CCNGG 4 cut(s) 753, 797, 888, 1189
SduI GDGCHC 2 cut(s) 179, 1189
SexAI ACCWGGT 1 cut(s) 751
SfcI CTRYAG 3 cut(s) 363, 736, 1051
Sfr274I CTCGAG 2 cut(s) 352, 563
SinI GGWCC 1 cut(s) 860
SlaI CTCGAG 2 cut(s) 352, 563
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 352, 563
SmoI CTYRAG 2 cut(s) 352, 563
Sse9I AATT 7 cut(s) 294, 823, 972, 1161, 1200, 1206, 1214
SsiI CCGC 4 cut(s) 46, 228, 470, 857
SspMI CTAG 1 cut(s) 449
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 4 cut(s) 751, 795, 886, 1187
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 5 cut(s) 190, 367, 511, 1055, 1081
TaiI ACGT 2 cut(s) 167, 985
TaqI TCGA 6 cut(s) 179, 339, 353, 524, 537, 564
TasI AATT 7 cut(s) 294, 823, 972, 1161, 1200, 1206, 1214
TatI WGTACW 2 cut(s) 865, 1063
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 42, 937
Tru1I TTAA 1 cut(s) 1146
Tru9I TTAA 1 cut(s) 1146
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 1 cut(s) 1135
TseI GCWGC 3 cut(s) 19, 48, 485
Tsp45I GTSAC 1 cut(s) 1135
TspDTI ATGAA 5 cut(s) 132, 791, 1125, 1173, 1207
TspGWI ACGGA 2 cut(s) 218, 836
TspRI CASTG 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 860
XagI CCTNNNNNAGG 2 cut(s) 756, 1016
XapI RAATTY 2 cut(s) 1206, 1214
XceI RCATGY 1 cut(s) 872
XhoI CTCGAG 2 cut(s) 352, 563
XmnI GAANNNNTTC 2 cut(s) 251, 402
XspI CTAG 1 cut(s) 449
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.